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  5. Transcript_contig_57499

Transcript_contig_57499 (57499)


Aliases : 57499

Description : SANT/Myb domain [Interproscan].


Gene families : OG_01_0000018 (OrthoFinder) Phylogenetic Tree(s): OG0000018_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_57499
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020780.48 tig00020780_g13797.t2 RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder
Cre02.g111200 30786020 No description available 0.02 OrthoFinder
Cre09.g399067 30780866 RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder
Cz06g23090.t1 No alias Myb-like DNA-binding domain [Interproscan]. 0.02 OrthoFinder
Cz10g17100.t1 No alias Myb-like DNA-binding domain [Interproscan]. 0.02 OrthoFinder
Cz16g00200.t1 No alias SANT/Myb domain [Interproscan]. 0.04 OrthoFinder
Dusal.0015s00002.1 33190926 Myb-like DNA-binding domain [Interproscan]. 0.01 OrthoFinder
Dusal.0158s00024.1 33195151 Myb-like DNA-binding domain [Interproscan]. 0.02 OrthoFinder
EOD11048 No alias Myb-like DNA-binding domain [Interproscan]. 0.01 OrthoFinder
EOD35386 No alias Myb-like DNA-binding domain [Interproscan]. 0.02 OrthoFinder
EOD36865 No alias SANT/Myb domain [Interproscan]. 0.01 OrthoFinder
EOD39718 No alias Myb-like DNA-binding domain [Interproscan]. 0.01 OrthoFinder
OT_05G01310.1 No alias SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
PTI_20G01740.1 No alias SANT/Myb domain [Interproscan]. 0.01 OrthoFinder
Sro1466_g275070.1 Contig2211.g18350 Myb-related protein A 0.01 OrthoFinder
Sro187_g080920.1 Contig2990.g23765 Myb-related protein A 0.02 OrthoFinder
TP03G03200.1 No alias SANT/Myb domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_55654 55654 SANT/Myb domain; Myb-like DNA-binding domain [Interproscan]. 0.01 OrthoFinder
Vocar.0001s1620.1 32884611 SANT/Myb domain [Interproscan]. 0.01 OrthoFinder
Vocar.0017s0204.1 32891362 SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
Vocar.0023s0018.1 32883402 SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
XM_002506532.1 MICPUN_73784, 73784 SANT/Myb domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000024.1_cds_PRW20404.1_5602 PRW20404 Myb-related B isoform A 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498292.1_7245 KAA8498292 Transcriptional activator Myb 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499043.1_7996 KAA8499043 Myb protein 0.01 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496233.1_2231 KAA8496233 Transcription factor MYB3R-5 0.01 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494855.1_3385 KAA8494855 Transcription factor 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001005 SANT/Myb 123 165
IPR001005 SANT/Myb 70 115
No external refs found!