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  5. Transcript_contig_57412

Transcript_contig_57412 (57412)


Aliases : 57412

Description : WD40 repeat [Interproscan].


Gene families : OG_01_0001025 (OrthoFinder) Phylogenetic Tree(s): OG0001025_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_57412
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020629.12 tig00020629_g12332.t1 Chromatin assembly factor 1 subunit FAS2 homolog... 0.02 OrthoFinder
Cz19g03120.t1 No alias WD40 repeat [Interproscan]. 0.04 OrthoFinder
EOD03923 No alias WD40 repeat [Interproscan]. 0.04 OrthoFinder
Sro841_g209590.1 Contig2025.g17357 Chromatin assembly factor 1 subunit FAS2 homolog 0.01 OrthoFinder
XM_002502425.1 MICPUN_58505, 58505 Nucleosome/chromatin assembly complex protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 12 40
IPR001680 WD40_repeat 168 200
IPR001680 WD40_repeat 122 153
IPR001680 WD40_repeat 54 89
No external refs found!