- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : 57256
Description : SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan].
Gene families : OG_01_0000532 (OrthoFinder) Phylogenetic Tree(s): OG0000532_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Transcript_contig_57256 | |
| Cluster | HCCA: Cluster_184 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00020562.25 | tig00020562_g11151.t1 | RNA processing.RNA modification.rRNA/tRNA... | 0.01 | OrthoFinder | |
| Cre03.g179860 | 30786956 | RNA processing.RNA modification.rRNA/tRNA... | 0.06 | OrthoFinder | |
| Cz01g45130.t1 | No alias | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.03 | OrthoFinder | |
| EOD09582 | No alias | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.04 | OrthoFinder | |
| PTI_16G01630.1 | No alias | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.03 | OrthoFinder | |
| PTI_17G01790.1 | No alias | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.01 | OrthoFinder | |
| Sro107_g053980.1 | Contig1548.g14073 | Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4a | 0.01 | OrthoFinder | |
| Sro2022_g311530.1 | Contig3299.g25891 | Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4a | 0.02 | OrthoFinder | |
| TP03G01810.1 | No alias | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.02 | OrthoFinder | |
| XM_002500182.1 | MICPUN_79216, 79216 | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.02 | OrthoFinder | |
| XM_002503226.1 | MICPUN_59410, 59410 | SAM-dependent methyltransferase RsmB/NOP2-type; CCT... | 0.05 | OrthoFinder | |
| XM_003057672.1 | MicpuC2_15736, 15736 | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.05 | OrthoFinder | |
| XM_003058639.1 | MicpuC2_39576, 39576 | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.04 | OrthoFinder | |
| XM_003061244.1 | MicpuC2_45780, 45780 | SAM-dependent methyltransferase RsmB/NOP2-type [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|LHPG02000018.1_cds_PRW32836.1_3709 | PRW32836 | TRNA (cytosine(34)-C(5))-methyltransferase | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008168 | methyltransferase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| CC | GO:0000178 | exosome (RNase complex) | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003729 | mRNA binding | IEP | Enrichment |
| MF | GO:0003746 | translation elongation factor activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005525 | GTP binding | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| CC | GO:0005730 | nucleolus | IEP | Enrichment |
| CC | GO:0005759 | mitochondrial matrix | IEP | Enrichment |
| CC | GO:0005849 | mRNA cleavage factor complex | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| BP | GO:0006378 | mRNA polyadenylation | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006414 | translational elongation | IEP | Enrichment |
| BP | GO:0006457 | protein folding | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0006810 | transport | IEP | Enrichment |
| BP | GO:0008104 | protein localization | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0015031 | protein transport | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
| MF | GO:0019843 | rRNA binding | IEP | Enrichment |
| CC | GO:0019867 | outer membrane | IEP | Enrichment |
| CC | GO:0030684 | preribosome | IEP | Enrichment |
| BP | GO:0031123 | RNA 3'-end processing | IEP | Enrichment |
| BP | GO:0031124 | mRNA 3'-end processing | IEP | Enrichment |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | Enrichment |
| CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
| CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
| BP | GO:0033036 | macromolecule localization | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043233 | organelle lumen | IEP | Enrichment |
| BP | GO:0043631 | RNA polyadenylation | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0045184 | establishment of protein localization | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0051179 | localization | IEP | Enrichment |
| BP | GO:0051234 | establishment of localization | IEP | Enrichment |
| CC | GO:0070013 | intracellular organelle lumen | IEP | Enrichment |
| BP | GO:0071702 | organic substance transport | IEP | Enrichment |
| BP | GO:0071705 | nitrogen compound transport | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| CC | GO:1905354 | exoribonuclease complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001678 | MeTrfase_RsmB/NOP2 | 181 | 430 |
| No external refs found! |