Aliases : 57084
Description : Small-subunit processome, Utp13; WD40 repeat [Interproscan].
Gene families : OG_01_0000612 (OrthoFinder) Phylogenetic Tree(s): OG0000612_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Transcript_contig_57084 | |
Cluster | HCCA: Cluster_231 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00000704.61 | tig00000704_g3346.t2 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.01 | OrthoFinder | |
Cre07.g344050 | 30774587 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.13 | OrthoFinder | |
Cz04g09230.t1 | No alias | WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. | 0.08 | OrthoFinder | |
EOD29254 | No alias | Small-subunit processome, Utp13; WD40 repeat [Interproscan]. | 0.04 | OrthoFinder | |
OT_08G01420.1 | No alias | Small-subunit processome, Utp13; WD40 repeat [Interproscan]. | 0.04 | OrthoFinder | |
OT_14G00400.1 | No alias | Thioredoxin domain; Phosphoadenosine phosphosulphate... | 0.01 | OrthoFinder | |
PTI_06G04180.1 | No alias | Small-subunit processome, Utp13; WD40 repeat [Interproscan]. | 0.07 | OrthoFinder | |
Sro1027_g232980.1 | Contig109.g1249 | Transducin beta-like protein 3 | 0.03 | OrthoFinder | |
Sro2695_g334900.1 | Contig897.g9510 | Transducin beta-like 3 | 0.01 | OrthoFinder | |
TP04G06150.1 | No alias | Small-subunit processome, Utp13; WD40 repeat [Interproscan]. | 0.04 | OrthoFinder | |
Vocar.0011s0002.1 | 32895390 | WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. | 0.02 | OrthoFinder | |
XM_002503015.1 | MICPUN_83206, 83206 | WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. | 0.09 | OrthoFinder | |
XM_003058642.1 | MicpuC2_518, 518 | Small-subunit processome, Utp13; WD40 repeat [Interproscan]. | 0.04 | OrthoFinder | |
lcl|BLLF01000847.1_cds_GFH15415.1_9892 | HaLaN_11639, GFH15415 | WD_REPEATS_REGION domain-containing protein | 0.01 | OrthoFinder | |
lcl|VRMN01000003.1_cds_KAA8495510.1_1508 | KAA8495510 | 5'-adenylylsulfate reductase 2, chloroplastic | 0.01 | OrthoFinder | |
lcl|VRMN01000007.1_cds_KAA8493381.1_9682 | KAA8493381 | Transducin beta-like protein 3 | 0.05 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | Interproscan |
BP | GO:0006364 | rRNA processing | IEA | Interproscan |
CC | GO:0032040 | small-subunit processome | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
CC | GO:0000178 | exosome (RNase complex) | IEP | Enrichment |
BP | GO:0001510 | RNA methylation | IEP | Enrichment |
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
MF | GO:0003723 | RNA binding | IEP | Enrichment |
MF | GO:0003729 | mRNA binding | IEP | Enrichment |
MF | GO:0003746 | translation elongation factor activity | IEP | Enrichment |
MF | GO:0003824 | catalytic activity | IEP | Enrichment |
MF | GO:0004540 | ribonuclease activity | IEP | Enrichment |
MF | GO:0004743 | pyruvate kinase activity | IEP | Enrichment |
MF | GO:0004814 | arginine-tRNA ligase activity | IEP | Enrichment |
MF | GO:0005525 | GTP binding | IEP | Enrichment |
CC | GO:0005849 | mRNA cleavage factor complex | IEP | Enrichment |
BP | GO:0006378 | mRNA polyadenylation | IEP | Enrichment |
BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
BP | GO:0006400 | tRNA modification | IEP | Enrichment |
BP | GO:0006414 | translational elongation | IEP | Enrichment |
BP | GO:0006420 | arginyl-tRNA aminoacylation | IEP | Enrichment |
BP | GO:0006457 | protein folding | IEP | Enrichment |
MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
MF | GO:0008173 | RNA methyltransferase activity | IEP | Enrichment |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Enrichment |
MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Enrichment |
MF | GO:0016426 | tRNA (adenine) methyltransferase activity | IEP | Enrichment |
MF | GO:0016429 | tRNA (adenine-N1-)-methyltransferase activity | IEP | Enrichment |
MF | GO:0016740 | transferase activity | IEP | Enrichment |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Enrichment |
MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
MF | GO:0019843 | rRNA binding | IEP | Enrichment |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
BP | GO:0030488 | tRNA methylation | IEP | Enrichment |
MF | GO:0030955 | potassium ion binding | IEP | Enrichment |
BP | GO:0031123 | RNA 3'-end processing | IEP | Enrichment |
BP | GO:0031124 | mRNA 3'-end processing | IEP | Enrichment |
MF | GO:0031420 | alkali metal ion binding | IEP | Enrichment |
CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | Enrichment |
BP | GO:0032259 | methylation | IEP | Enrichment |
MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
CC | GO:0034708 | methyltransferase complex | IEP | Enrichment |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
MF | GO:0036094 | small molecule binding | IEP | Enrichment |
BP | GO:0042274 | ribosomal small subunit biogenesis | IEP | Enrichment |
MF | GO:0043167 | ion binding | IEP | Enrichment |
MF | GO:0043168 | anion binding | IEP | Enrichment |
BP | GO:0043414 | macromolecule methylation | IEP | Enrichment |
CC | GO:0043527 | tRNA methyltransferase complex | IEP | Enrichment |
BP | GO:0043631 | RNA polyadenylation | IEP | Enrichment |
BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
CC | GO:1902494 | catalytic complex | IEP | Enrichment |
CC | GO:1905354 | exoribonuclease complex | IEP | Enrichment |
CC | GO:1990234 | transferase complex | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001680 | WD40_repeat | 134 | 170 |
IPR001680 | WD40_repeat | 493 | 523 |
IPR001680 | WD40_repeat | 175 | 212 |
IPR001680 | WD40_repeat | 612 | 649 |
IPR001680 | WD40_repeat | 433 | 470 |
IPR001680 | WD40_repeat | 93 | 128 |
IPR001680 | WD40_repeat | 531 | 565 |
IPR001680 | WD40_repeat | 569 | 607 |
IPR013934 | SSU_processome_Utp13 | 671 | 805 |
No external refs found! |