Transcript_contig_57083 (57083)


Aliases : 57083

Description : Rab-GTPase-TBC domain [Interproscan].


Gene families : OG_01_0000138 (OrthoFinder) Phylogenetic Tree(s): OG0000138_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_57083
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
Cz17g10040.t1 No alias Rab-GTPase-TBC domain [Interproscan]. 0.01 OrthoFinder
Dusal.0377s00017.1 33195257 Rab-GTPase-TBC domain [Interproscan]. 0.01 OrthoFinder
EOD08879 No alias Rab-GTPase-TBC domain [Interproscan]. 0.02 OrthoFinder
Sro61_g035150.1 Contig3112.g24768 USP6 N-terminal-like protein 0.02 OrthoFinder
SymbC1.scaffold2229.4 2229.4 Rab-GTPase-TBC domain [Interproscan]. 0.01 OrthoFinder
Vocar.0014s0098.1 32888499 Rab-GTPase-TBC domain [Interproscan]. 0.01 OrthoFinder
Vocar.0029s0020.1 32887317 Rab-GTPase-TBC domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01005237.1_cds_GFH30923.1_25400 HaLaN_29861, GFH30923 Rab-GAP TBC domain-containing protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000195 Rab-GTPase-TBC_dom 51 255
No external refs found!