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  5. Transcript_contig_57056

Transcript_contig_57056 (57056)


Aliases : 57056

Description : Polymerase, nucleotidyl transferase domain [Interproscan].


Gene families : OG_01_0000397 (OrthoFinder) Phylogenetic Tree(s): OG0000397_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_57056
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
Cre09.g410500 30781296 No description available 0.01 OrthoFinder
Cre17.g720750 30782685 No description available 0.03 OrthoFinder
Cz04g39180.t1 No alias Polymerase, nucleotidyl transferase domain;... 0.02 OrthoFinder
Cz08g01160.t1 No alias Polymerase, nucleotidyl transferase domain;... 0.02 OrthoFinder
Dusal.0111s00011.1 33199821 PAP/25A-associated; Polymerase, nucleotidyl transferase... 0.02 OrthoFinder
Dusal.0269s00010.1 33186346 Hypothetical protein 0.01 OrthoFinder
PTI_28G01430.1 No alias PAP/25A-associated; Polymerase, nucleotidyl transferase... 0.01 OrthoFinder
Sro560_g166650.1 Contig2779.g22380 Canonical poly(A) RNA polymerase PAPD7 0.01 OrthoFinder
XM_003057869.1 MicpuC2_47167, 47167 PAP/25A-associated; Polymerase, nucleotidyl transferase... 0.03 OrthoFinder
lcl|BLLF01000006.1_cds_GFH05714.1_191 HaLaN_00217, GFH05714 Hypothetical protein 0.01 OrthoFinder
lcl|BLLF01000770.1_cds_GFH14814.1_9291 HaLaN_10935, GFH14814 Poly(A) polymerase 0.02 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44364.1_2309 PRW44364 Poly(A) RNA polymerase 2 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0016779 nucleotidyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR002934 Polymerase_NTP_transf_dom 179 213
No external refs found!