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  5. Transcript_contig_56865

Transcript_contig_56865 (56865)


Aliases : 56865

Description : CRC domain [Interproscan].


Gene families : OG_01_0000428 (OrthoFinder) Phylogenetic Tree(s): OG0000428_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56865
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Cz15g07260.t1 No alias CRC domain [Interproscan]. 0.03 OrthoFinder
EOD16931 No alias CRC domain [Interproscan]. 0.02 OrthoFinder
EOD18239 No alias CRC domain [Interproscan]. 0.03 OrthoFinder
OT_09G04280.1 No alias CRC domain [Interproscan]. 0.02 OrthoFinder
Sro773_g200530.1 Contig1379.g12696 Lin-54 homolog 0.01 OrthoFinder
TP01G08390.1 No alias CRC domain [Interproscan]. 0.01 OrthoFinder
TP02G02970.1 No alias CRC domain [Interproscan]. 0.01 OrthoFinder
Vocar.0007s0384.1 32888329 CRC domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000010.1_cds_PRW51146.1_998 PRW51146 Tesmin TSO1-like CXC 5 0.02 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20757.1_5317 PRW20757 Tesmin TSO1-like CXC 5 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004100 chitin synthase activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006023 aminoglycan biosynthetic process IEP Enrichment
BP GO:0006030 chitin metabolic process IEP Enrichment
BP GO:0006031 chitin biosynthetic process IEP Enrichment
BP GO:0006040 amino sugar metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0008375 acetylglucosaminyltransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0046349 amino sugar biosynthetic process IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:1901071 glucosamine-containing compound metabolic process IEP Enrichment
BP GO:1901073 glucosamine-containing compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR005172 CRC 251 285
IPR005172 CRC 320 357
No external refs found!