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  5. Transcript_contig_56721

Transcript_contig_56721 (56721)


Aliases : 56721

Description : Aminoacyl-tRNA synthetase, class Ic [Interproscan].


Gene families : OG_01_0003010 (OrthoFinder) Phylogenetic Tree(s): OG0003010_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56721
Cluster HCCA: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000828.28 tig00000828_g4631.t1 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.01 OrthoFinder
Cre05.g238322 30783171 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.01 OrthoFinder
Vocar.0017s0130.1 32891551 Aminoacyl-tRNA synthetase, class Ic [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR002305 aa-tRNA-synth_Ic 78 373
No external refs found!