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  5. Transcript_contig_56560

Transcript_contig_56560 (56560)


Aliases : 56560

Description : tRNA-guanine(15) transglycosylase-like [Interproscan].


Gene families : OG_01_0000326 (OrthoFinder) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56560
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000836.14 tig00000836_g4697.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00000881.2 tig00000881_g5216.t1 No description available 0.01 OrthoFinder
Cre10.g451000 30790399 No description available 0.02 OrthoFinder
Cz06g20120.t1 No alias tRNA-guanine(15) transglycosylase-like [Interproscan]. 0.02 OrthoFinder
Sro2193_g318460.1 Contig1101.g10667 Queuine tRNA-ribosyltransferase 0.01 OrthoFinder
XM_002504136.1 MICPUN_102163, 102163 Queuine tRNA-ribosyltransferase (TGT) 0.02 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493045.1_2781 KAA8493045 Queuine tRNA-ribosyltransferase 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006400 tRNA modification IEA Interproscan
MF GO:0016763 pentosyltransferase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006721 terpenoid metabolic process IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0016114 terpenoid biosynthetic process IEP Enrichment
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016849 phosphorus-oxygen lyase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0036265 RNA (guanine-N7)-methylation IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
MF GO:0052689 carboxylic ester hydrolase activity IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
BP GO:0070476 rRNA (guanine-N7)-methylation IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR002616 tRNA_ribo_trans-like 91 301
No external refs found!