Transcript_contig_56264 (56264)

Aliases : 56264

Description : ABC transporter type 1, transmembrane domain; ABC transporter-like [Interproscan].

Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Transcript_contig_56264
Cluster	HCCA: Cluster_214

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000158.83	tig00000158_g10189.t1	ABC transporter C family member 1 OS=Arabidopsis thaliana	0.01	OrthoFinder
Cpa\|evm.model.tig00000158.84	tig00000158_g10189.t1	Solute transport.primary active transport.ABC...	0.02	OrthoFinder
Cpa\|evm.model.tig00020553.190	tig00020553_g10680.t1	ABC transporter C family member 4 OS=Arabidopsis thaliana	0.01	OrthoFinder
Cpa\|evm.model.tig00020941.28	tig00020941_g16221.t1	ABC transporter C family member 14 OS=Arabidopsis thaliana	0.03	OrthoFinder
Cre02.g097800	30785105	ABC transporter C family member 2 OS=Arabidopsis thaliana	0.01	OrthoFinder
Cre04.g228650	30791460	Solute transport.primary active transport.ABC...	0.02	OrthoFinder
Cre07.g325761	30775279	ABC transporter C family member 2 OS=Arabidopsis thaliana	0.03	OrthoFinder
Cre13.g564900	30784450, MRP3	Solute transport.primary active transport.ABC...	0.03	OrthoFinder
Cre17.g734612	30781956, MRP2	ABC transporter C family member 14 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cz01g21260.t1	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.01	OrthoFinder
Dusal.0852s00004.1	33185428	ABC transporter-like; ABC transporter type 1,...	0.05	OrthoFinder
EOD18360	No alias	ABC transporter type 1, transmembrane domain; ABC...	0.01	OrthoFinder
Sro1322_g262550.1	Contig3764.g28905	Multiple drug resistance-associated protein-like transporter 1	0.01	OrthoFinder
Sro1659_g289200.1	Contig194.g2262	Oligomycin resistance ATP-dependent permease YOR1	0.01	OrthoFinder
SymbC1.scaffold6437.5	6437.5	ABC transporter-like; ABC transporter type 1,...	0.01	OrthoFinder
SymbC1.scaffold7045.1	7045.1	ABC transporter-like; ABC transporter type 1,...	0.01	OrthoFinder
Vocar.0012s0088.1	32894879	ABC transporter-like; ABC transporter type 1,...	0.02	OrthoFinder
Vocar.0026s0119.1	32892596	ABC transporter-like; ABC transporter type 1,...	0.01	OrthoFinder
XM_002508173.1	MICPUN_94915, 94915	ATP-binding cassette superfamily	0.02	OrthoFinder
lcl\|BLLF01000618.1_cds_GFH13488.1_7965	HaLaN_09381, GFH13488	ABC transporter	0.02	OrthoFinder
lcl\|BLLF01000878.1_cds_GFH15646.1_10123	HaLaN_11907, GFH15646	ABC transporter type 1, transmembrane domain [Interproscan].	0.01	OrthoFinder
lcl\|BLLF01003949.1_cds_GFH28596.1_23073	HaLaN_27113, GFH28596	ABC transporter type 1, transmembrane domain; ABC...	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016887	ATPase	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000105	histidine biosynthetic process	IEP	Enrichment
MF	GO:0000295	adenine nucleotide transmembrane transporter activity	IEP	Enrichment
MF	GO:0003824	catalytic activity	IEP	Enrichment
MF	GO:0004399	histidinol dehydrogenase activity	IEP	Enrichment
MF	GO:0004421	hydroxymethylglutaryl-CoA synthase activity	IEP	Enrichment
MF	GO:0004497	monooxygenase activity	IEP	Enrichment
MF	GO:0005346	purine ribonucleotide transmembrane transporter activity	IEP	Enrichment
MF	GO:0005347	ATP transmembrane transporter activity	IEP	Enrichment
MF	GO:0005471	ATP:ADP antiporter activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
BP	GO:0006547	histidine metabolic process	IEP	Enrichment
BP	GO:0006629	lipid metabolic process	IEP	Enrichment
BP	GO:0006720	isoprenoid metabolic process	IEP	Enrichment
BP	GO:0006862	nucleotide transport	IEP	Enrichment
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Enrichment
MF	GO:0008509	anion transmembrane transporter activity	IEP	Enrichment
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Enrichment
BP	GO:0008610	lipid biosynthetic process	IEP	Enrichment
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Enrichment
BP	GO:0009058	biosynthetic process	IEP	Enrichment
MF	GO:0010277	chlorophyllide a oxygenase [overall] activity	IEP	Enrichment
MF	GO:0015215	nucleotide transmembrane transporter activity	IEP	Enrichment
MF	GO:0015216	purine nucleotide transmembrane transporter activity	IEP	Enrichment
MF	GO:0015217	ADP transmembrane transporter activity	IEP	Enrichment
MF	GO:0015301	anion:anion antiporter activity	IEP	Enrichment
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	Enrichment
BP	GO:0015748	organophosphate ester transport	IEP	Enrichment
BP	GO:0015931	nucleobase-containing compound transport	IEP	Enrichment
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Enrichment
MF	GO:0016491	oxidoreductase activity	IEP	Enrichment
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Enrichment
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Enrichment
MF	GO:0016703	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	IEP	Enrichment
MF	GO:0016746	acyltransferase activity	IEP	Enrichment
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Enrichment
BP	GO:0044249	cellular biosynthetic process	IEP	Enrichment
BP	GO:0044255	cellular lipid metabolic process	IEP	Enrichment
MF	GO:0046912	acyltransferase, acyl groups converted into alkyl on transfer	IEP	Enrichment
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Enrichment
MF	GO:0051287	NAD binding	IEP	Enrichment
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Enrichment
BP	GO:0055114	obsolete oxidation-reduction process	IEP	Enrichment
MF	GO:0140323	solute:anion antiporter activity	IEP	Enrichment
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Enrichment
BP	GO:1901576	organic substance biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	169	435
IPR011527	ABC1_TM_dom	932	1191
IPR003439	ABC_transporter-like_ATP-bd	497	631
IPR003439	ABC_transporter-like_ATP-bd	1263	1412

External Links

No external refs found!

Transcript_contig_56264 (56264)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation