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  5. Transcript_contig_56016

Transcript_contig_56016 (56016)


Aliases : 56016

Description : Bicarbonate transporter, C-terminal [Interproscan].


Gene families : OG_01_0000276 (OrthoFinder) Phylogenetic Tree(s): OG0000276_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_56016
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
EOD28454 No alias Bicarbonate transporter, C-terminal [Interproscan]. 0.01 OrthoFinder
EOD39595 No alias Bicarbonate transporter, C-terminal [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000024.1_cds_PRW20397.1_5585 PRW20397 Boron transporter 1-like isoform X1 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006820 anion transport IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR011531 HCO3_transpt_C 26 197
IPR011531 HCO3_transpt_C 503 576
IPR011531 HCO3_transpt_C 213 387
No external refs found!