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Transcript_contig_55882 (55882)


Aliases : 55882

Description : Ankyrin repeat-containing domain; Ion transport domain [Interproscan].


Gene families : OG_01_0000719 (OrthoFinder) Phylogenetic Tree(s): OG0000719_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55882
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
Cre01.g012650 30788583 Solute transport.channels.VIC superfamily.voltage-gated... 0.03 OrthoFinder
Cre01.g012700 30789326 Solute transport.channels.VIC superfamily.voltage-gated... 0.01 OrthoFinder
Cre01.g012850 30789525 Solute transport.channels.VIC superfamily.voltage-gated... 0.02 OrthoFinder
Dusal.0441s00002.1 33203015 Ion transport domain; Ankyrin repeat; Ankyrin... 0.02 OrthoFinder
PTI_10G02890.1 No alias Ion transport domain; Ankyrin repeat-containing domain;... 0.01 OrthoFinder
lcl|BLLF01000049.1_cds_GFH06651.1_1128 HaLaN_01317, GFH06651 Ankyrin repeats (many copies) [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA Interproscan
BP GO:0006811 ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Enrichment
MF GO:0008131 primary amine oxidase activity IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0009308 amine metabolic process IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Enrichment
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Enrichment
MF GO:0045735 nutrient reservoir activity IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0048038 quinone binding IEP Enrichment
InterPro domains Description Start Stop
IPR020683 Ankyrin_rpt-contain_dom 734 793
IPR020683 Ankyrin_rpt-contain_dom 800 895
IPR005821 Ion_trans_dom 135 365
No external refs found!