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Aliases : 55863
Description : Strawberry notch, helicase C domain; Strawberry notch, AAA domain [Interproscan].
Gene families : OG_01_0000467 (OrthoFinder) Phylogenetic Tree(s): OG0000467_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Transcript_contig_55863 | |
| Cluster | HCCA: Cluster_166 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre01.g053250 | 30789240 | Protein FORGETTER 1 OS=Arabidopsis thaliana | 0.01 | OrthoFinder | |
| Cre07.g350100 | 30774786 | Protein FORGETTER 1 OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
| Cre13.g578501 | 30784198 | Protein FORGETTER 1 OS=Arabidopsis thaliana | 0.01 | OrthoFinder | |
| Cz08g14040.t1 | No alias | Strawberry notch, helicase C domain;... | 0.01 | OrthoFinder | |
| Cz08g29260.t1 | No alias | Strawberry notch, helicase C domain; Zinc finger,... | 0.02 | OrthoFinder | |
| Dusal.0166s00009.1 | 33188727 | Strawberry notch, AAA domain [Interproscan]. | 0.01 | OrthoFinder | |
| EOD16011 | No alias | Strawberry notch, helicase C domain [Interproscan]. | 0.01 | OrthoFinder | |
| OT_03G05510.1 | No alias | Strawberry notch, helicase C domain; Strawberry notch,... | 0.04 | OrthoFinder | |
| Sro106_g053630.1 | Contig1122.g10760 | Strawberry notch homolog 2 | 0.02 | OrthoFinder | |
| TP02G01100.1 | No alias | Strawberry notch, AAA domain; Strawberry notch, helicase... | 0.01 | OrthoFinder | |
| Vocar.0001s0130.1 | 32884628 | Strawberry notch, AAA domain; Strawberry notch, helicase... | 0.02 | OrthoFinder | |
| lcl|BLLF01001655.1_cds_GFH20545.1_15022 | HaLaN_17686, GFH20545 | PHD-type domain-containing protein | 0.02 | OrthoFinder | |
| lcl|BLLF01004849.1_cds_GFH30354.1_24831 | HaLaN_29190, GFH30354 | Strawberry notch, AAA domain [Interproscan]. | 0.01 | OrthoFinder | |
| lcl|LHPG02000005.1_cds_PRW58082.1_8009 | PRW58082 | Strawberry notch-like protein 1-like | 0.01 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003678 | DNA helicase activity | IEP | Enrichment |
| MF | GO:0003909 | DNA ligase activity | IEP | Enrichment |
| MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Enrichment |
| MF | GO:0003954 | NADH dehydrogenase activity | IEP | Enrichment |
| MF | GO:0003955 | NAD(P)H dehydrogenase (quinone) activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| BP | GO:0006310 | DNA recombination | IEP | Enrichment |
| BP | GO:0006464 | cellular protein modification process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0006904 | vesicle docking involved in exocytosis | IEP | Enrichment |
| MF | GO:0008134 | transcription factor binding | IEP | Enrichment |
| MF | GO:0008137 | NADH dehydrogenase (ubiquinone) activity | IEP | Enrichment |
| BP | GO:0009966 | regulation of signal transduction | IEP | Enrichment |
| BP | GO:0010646 | regulation of cell communication | IEP | Enrichment |
| BP | GO:0015969 | guanosine tetraphosphate metabolic process | IEP | Enrichment |
| BP | GO:0016579 | protein deubiquitination | IEP | Enrichment |
| MF | GO:0016651 | oxidoreductase activity, acting on NAD(P)H | IEP | Enrichment |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | Enrichment |
| MF | GO:0016840 | carbon-nitrogen lyase activity | IEP | Enrichment |
| MF | GO:0016843 | amine-lyase activity | IEP | Enrichment |
| MF | GO:0016844 | strictosidine synthase activity | IEP | Enrichment |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Enrichment |
| MF | GO:0017025 | TBP-class protein binding | IEP | Enrichment |
| BP | GO:0018208 | peptidyl-proline modification | IEP | Enrichment |
| BP | GO:0022406 | membrane docking | IEP | Enrichment |
| BP | GO:0023051 | regulation of signaling | IEP | Enrichment |
| BP | GO:0032012 | regulation of ARF protein signal transduction | IEP | Enrichment |
| BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | Enrichment |
| BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | Enrichment |
| BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | Enrichment |
| BP | GO:0034035 | purine ribonucleoside bisphosphate metabolic process | IEP | Enrichment |
| BP | GO:0036211 | protein modification process | IEP | Enrichment |
| BP | GO:0043412 | macromolecule modification | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0046578 | regulation of Ras protein signal transduction | IEP | Enrichment |
| BP | GO:0048278 | vesicle docking | IEP | Enrichment |
| BP | GO:0048583 | regulation of response to stimulus | IEP | Enrichment |
| MF | GO:0050136 | NADH dehydrogenase (quinone) activity | IEP | Enrichment |
| BP | GO:0051056 | regulation of small GTPase mediated signal transduction | IEP | Enrichment |
| BP | GO:0051640 | organelle localization | IEP | Enrichment |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Enrichment |
| BP | GO:0140029 | exocytic process | IEP | Enrichment |
| BP | GO:0140056 | organelle localization by membrane tethering | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| MF | GO:0140296 | general transcription initiation factor binding | IEP | Enrichment |
| BP | GO:1902531 | regulation of intracellular signal transduction | IEP | Enrichment |
| No external refs found! |