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  5. Cpa|evm.model.tig00000711.46

Cpa|evm.model.tig00000711.46 (tig00000711_g3409.t1)


Aliases : tig00000711_g3409.t1

Description : Structural maintenance of chromosomes protein 3 OS=Arabidopsis thaliana


Gene families : OG_01_0001808 (OrthoFinder) Phylogenetic Tree(s): OG0001808_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000711.46
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Cre10.g445650 30790176, SMC3 Cell cycle.mitosis and meiosis.sister chromatid... 0.06 OrthoFinder
Cz13g08100.t1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.04 OrthoFinder
EOD06899 No alias Hypothetical protein [Ensembl]. 0.03 OrthoFinder
OT_09G02100.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.04 OrthoFinder
PTI_24G00330.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54820 54820 RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.03 OrthoFinder
Vocar.0026s0057.1 32892426 SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan]. 0.03 OrthoFinder
XM_002508766.1 MICPUN_85842, 85842 Condensin complex component 0.05 OrthoFinder
XM_003056761.1 MicpuC2_25650, 25650 Condensin complex component 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 2 1084
IPR010935 SMC_hinge 478 607
No external refs found!