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  5. Cpa|evm.model.tig00000711.41

Cpa|evm.model.tig00000711.41 (tig00000711_g3404.t1)


Aliases : tig00000711_g3404.t1

Description : Cell cycle.mitosis and meiosis.chromatin condensation.condensin I/II complex.CAP-C/SMC4 component


Gene families : OG_01_0001971 (OrthoFinder) Phylogenetic Tree(s): OG0001971_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000711.41
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Cre12.g493400 30791789, SMC4 Cell cycle.mitosis and meiosis.chromatin... 0.06 OrthoFinder
Cz03g14220.t1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.04 OrthoFinder
Cz03g14230.t1 No alias RecF/RecN/SMC, N-terminal [Interproscan]. 0.06 OrthoFinder
Dusal.0297s00010.1 33197376 RecF/RecN/SMC, N-terminal [Interproscan]. 0.03 OrthoFinder
Dusal.0297s00013.1 33197366 RecF/RecN/SMC, N-terminal [Interproscan]. 0.07 OrthoFinder
EOD07120 No alias RecF/RecN/SMC, N-terminal [Interproscan]. 0.05 OrthoFinder
EOD10750 No alias RecF/RecN/SMC, N-terminal [Interproscan]. 0.06 OrthoFinder
EOD30554 No alias SMCs flexible hinge [Interproscan]. 0.05 OrthoFinder
EOD30555 No alias RecF/RecN/SMC, N-terminal [Interproscan]. 0.03 OrthoFinder
EOD40964 No alias RecF/RecN/SMC, N-terminal [Interproscan]. 0.01 OrthoFinder
OT_06G01300.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.07 OrthoFinder
PTI_03G05440.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.06 OrthoFinder
Sro1170_g248720.1 Contig3531.g27301 Structural maintenance of chromosomes protein 4 (Fragment) 0.07 OrthoFinder
TP14G01310.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.04 OrthoFinder
Vocar.0031s0036.1 32890031 SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan]. 0.03 OrthoFinder
XM_002500796.1 MICPUN_56721, 56721 Condensin complex component 0.06 OrthoFinder
XM_003059384.1 MicpuC2_33825, 33825 Condensin complex component 0.03 OrthoFinder
lcl|BLLF01001573.1_cds_GFH20090.1_14567 HaLaN_17159, GFH20090 Structural maintenance of chromosomes protein 4 0.01 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57046.1_8805 PRW57046 Structural maintenance of chromosomes 4 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499969.1_8922 KAA8499969 Structural maintenance of chromosomes protein 4 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Enrichment
CC GO:0000775 chromosome, centromeric region IEP Enrichment
CC GO:0000776 kinetochore IEP Enrichment
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005815 microtubule organizing center IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007049 cell cycle IEP Enrichment
BP GO:0007059 chromosome segregation IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0031144 proteasome localization IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
BP GO:0031503 protein-containing complex localization IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034629 cellular protein-containing complex localization IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
CC GO:0098687 chromosomal region IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR010935 SMC_hinge 556 603
IPR003395 RecF/RecN/SMC_N 14 1219
No external refs found!