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  5. Transcript_contig_55435

Transcript_contig_55435 (55435)


Aliases : 55435

Description : WD40 repeat [Interproscan].


Gene families : OG_01_0001975 (OrthoFinder) Phylogenetic Tree(s): OG0001975_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55435
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Cre12.g527500 30791797 WD40 repeat-containing protein HOS15 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz05g19030.t1 No alias Hypothetical protein 0.01 OrthoFinder
EOD25596 No alias WD40 repeat; LIS1 homology motif [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000202.1_cds_GFH09012.1_3489 HaLaN_04071, GFH09012 F-box-like/WD repeat domain-containing protein 0.02 OrthoFinder
lcl|BLLF01000383.1_cds_GFH11204.1_5681 HaLaN_06671, GFH11204 LIS1 homology motif; WD40 repeat [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000012.1_cds_PRW45142.1_1959 PRW45142 F-box-like WD repeat-containing TBL1XR1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008375 acetylglucosaminyltransferase activity IEP Enrichment
MF GO:0015293 symporter activity IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 2 14
IPR001680 WD40_repeat 64 102
IPR001680 WD40_repeat 20 60
No external refs found!