Transcript_contig_55376 (55376)


Aliases : 55376

Description : CNNM, transmembrane domain; CBS domain [Interproscan].


Gene families : OG_01_0000296 (OrthoFinder) Phylogenetic Tree(s): OG0000296_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55376
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020943.43 tig00020943_g16285.t1 DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz03g33060.t1 No alias CNNM, transmembrane domain [Interproscan]. 0.02 OrthoFinder
EOD27417 No alias CNNM, transmembrane domain [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold13257.1 13257.1 Hypothetical protein 0.01 OrthoFinder
TP06G06190.1 No alias CNNM, transmembrane domain [Interproscan]. 0.02 OrthoFinder
XM_002507611.1 MICPUN_51699, 51699 HlyC/CorC family transporter 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498808.1_7761 KAA8498808 Metal transporter CNNM2 0.02 OrthoFinder
lcl|VRMN01000024.1_cds_KAA8490526.1_4676 KAA8490526 Metal transporter CNNM2 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Enrichment
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR000644 CBS_dom 295 354
IPR002550 CNNM 37 197
No external refs found!