1. Home
  2. Species
  3. Chlorella vulgaris
  4. Sequence
  5. Transcript_contig_55294

Transcript_contig_55294 (55294)


Aliases : 55294

Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000163 (OrthoFinder) Phylogenetic Tree(s): OG0000163_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55294
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000383.37 tig00000383_g24647.t1 Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia 0.01 OrthoFinder
Cpa|evm.model.tig00021464.4 tig00021464_g21711.t1 No description available 0.01 OrthoFinder
Cre04.g216650 30791026 No description available 0.02 OrthoFinder
Cre07.g352650 30775322 No description available 0.02 OrthoFinder
Cre09.g391949 30781196 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
Cz03g21120.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Dusal.0031s00043.1 33192235 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Dusal.0173s00022.1 33191835 Hypothetical protein 0.01 OrthoFinder
EOD21349 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
EOD34357 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
OT_16G01220.1 No alias Chorismate pyruvate-lyase Rv2949c-like [Interproscan]. 0.02 OrthoFinder
PTI_02G06030.1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Sro760_g198350.1 Contig3371.g26396 U2AF 65 kDa subunit 0.02 OrthoFinder
XM_002506527.1 MICPUN_73195, 73195 Chorismate pyruvate-lyase Rv2949c-like [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01001843.1_cds_GFH21509.1_15986 HaLaN_18829, GFH21509 Spindle assembly abnormal 6-like protein 0.01 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45747.1_1280 PRW45747 Chorismate lyase isoform B 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0000469 cleavage involved in rRNA processing IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004807 triose-phosphate isomerase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Enrichment
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 278 347
No external refs found!