Transcript_contig_55229 (55229)


Aliases : 55229

Description : Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant [Interproscan].


Gene families : OG_01_0001120 (OrthoFinder) Phylogenetic Tree(s): OG0001120_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55229
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000923.6 tig00000923_g5468.t1 Redox homeostasis.chloroplast redox homeostasis.2-Cys... 0.02 OrthoFinder
Cpa|evm.model.tig00021373.6 tig00021373_g21073.t1 Peroxiredoxin Q, chloroplastic OS=Triticum aestivum 0.01 OrthoFinder
Sro1922_g305630.1 Contig917.g9646 Peroxiredoxin Q, chloroplastic (Fragment) 0.02 OrthoFinder
Sro251_g099370.1 Contig687.g8017 Peroxiredoxin Q, chloroplastic 0.03 OrthoFinder
Vocar.0009s0108.1 32893327 Alkyl hydroperoxide reductase subunit C/ Thiol specific... 0.01 OrthoFinder
XM_002509096.1 MICPUN_73292, 73292 Alkyl hydroperoxide reductase subunit C/ Thiol specific... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0016209 antioxidant activity IEA Interproscan
MF GO:0016491 oxidoreductase activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006952 defense response IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
MF GO:0008241 peptidyl-dipeptidase activity IEP Enrichment
BP GO:0009314 response to radiation IEP Enrichment
BP GO:0009411 response to UV IEP Enrichment
BP GO:0009416 response to light stimulus IEP Enrichment
BP GO:0009628 response to abiotic stimulus IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000866 AhpC/TSA 27 147
No external refs found!