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  5. Transcript_contig_55015

Transcript_contig_55015 (55015)


Aliases : 55015

Description : Transcription factor TFIIB, cyclin-like domain [Interproscan].


Gene families : OG_01_0002221 (OrthoFinder) Phylogenetic Tree(s): OG0002221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_55015
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
EOD23756 No alias Transcription factor TFIIB, cyclin-like domain; Zinc... 0.01 OrthoFinder
OT_13G01670.1 No alias Transcription factor TFIIB, cyclin-like domain; Brf1,... 0.03 OrthoFinder
TP02G00840.1 No alias Brf1, TBP-binding domain; Transcription factor TFIIB,... 0.01 OrthoFinder
lcl|BLLF01003386.1_cds_GFH27199.1_21676 HaLaN_25481, GFH27199 Transcription factor TFIIB, cyclin-like domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000028.1_cds_PRW05810.1_5983 PRW05810 Transcription factor IIIB 90 kDa subunit 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0017025 TBP-class protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006952 defense response IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
MF GO:0033897 ribonuclease T2 activity IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR013150 TFIIB_cyclin 109 164
IPR013150 TFIIB_cyclin 194 267
No external refs found!