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  5. Transcript_contig_54885

Transcript_contig_54885 (54885)


Aliases : 54885

Description : Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain [Interproscan].


Gene families : OG_01_0000075 (OrthoFinder) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54885
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
Cre07.g352350 30774541 ATP-dependent zinc metalloprotease FTSH, chloroplastic... 0.05 OrthoFinder
Cre09.g393950 30780473 Probable inactive ATP-dependent zinc metalloprotease... 0.02 OrthoFinder
Cre17.g739752 30782539 Probable inactive ATP-dependent zinc metalloprotease... 0.02 OrthoFinder
Cz05g27050.t1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.02 OrthoFinder
Cz10g22210.t1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.01 OrthoFinder
Cz13g18040.t1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.03 OrthoFinder
Dusal.0274s00008.1 33185615 ATPase, AAA-type, core; Peptidase M41 [Interproscan]. 0.01 OrthoFinder
EOD04811 No alias ATP-dependent metalloprotease FtsH [Ensembl]. 0.01 OrthoFinder
OT_08G02770.1 No alias Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.03 OrthoFinder
OT_10G01100.1 No alias Peptidase M41; AAA ATPase, AAA+ lid domain; ATPase,... 0.03 OrthoFinder
OT_11G02060.1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.04 OrthoFinder
TP10G03500.1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.01 OrthoFinder
Vocar.0016s0146.1 32898067 Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.01 OrthoFinder
XM_002503449.1 MICPUN_59866, 59866 Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.03 OrthoFinder
XM_002503935.1 MICPUN_83563, 83563 AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.04 OrthoFinder
XM_002505949.1 MICPUN_106506, 106506 Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.02 OrthoFinder
XM_002508006.1 MICPUN_94954, 94954 Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.02 OrthoFinder
XM_003058612.1 MicpuC2_58438, 58438 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.02 OrthoFinder
lcl|BLLF01000459.1_cds_GFH12019.1_6496 HaLaN_07636, GFH12019 Putative cell division protease ftsH, chloroplastic 0.01 OrthoFinder
lcl|BLLF01003257.1_cds_GFH26835.1_21312 HaLaN_25053, GFH26835 AAA domain-containing protein 0.02 OrthoFinder
lcl|BLLF01005719.1_cds_GFH31553.1_26030 HaLaN_30618, GFH31553 Membrane AAA-metalloprotease 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60287.1_4164 PRW60287 Cell division isoform A 0.01 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33093.1_3571 PRW33093 Membrane AAA-metalloprotease 0.02 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33078.1_3788 PRW33078 ATP-dependent zinc metalloprotease 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 591 629
IPR003959 ATPase_AAA_core 437 568
IPR000642 Peptidase_M41 660 850
No external refs found!