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  5. Transcript_contig_54555

Transcript_contig_54555 (54555)


Aliases : 54555

Description : Regulator of chromosome condensation, RCC1 [Interproscan].


Gene families : OG_01_0000020 (OrthoFinder) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54555
Cluster HCCA: Cluster_187

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020938.2 tig00020938_g16128.t1 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz09g14190.t1 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.01 OrthoFinder
EOD26777 No alias Regulator of chromosome condensation (RCC1) repeat;... 0.01 OrthoFinder
EOD29477 No alias E3 ubiquitin ligase [Ensembl]. 0.01 OrthoFinder
OT_10G01050.1 No alias Brevis radix (BRX) domain; Regulator of chromosome... 0.01 OrthoFinder
lcl|BLLF01000535.1_cds_GFH12745.1_7222 HaLaN_08488, GFH12745 UV-resistance 8 protein 0.01 OrthoFinder
lcl|BLLF01000610.1_cds_GFH13424.1_7901 HaLaN_09308, GFH13424 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW60074.1_6433 PRW60074 RCC1 BLIP-II 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Enrichment
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0004402 histone acetyltransferase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
CC GO:0005743 mitochondrial inner membrane IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006839 mitochondrial transport IEP Enrichment
BP GO:0006848 pyruvate transport IEP Enrichment
BP GO:0006850 mitochondrial pyruvate transmembrane transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015711 organic anion transport IEP Enrichment
BP GO:0015718 monocarboxylic acid transport IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0019866 organelle inner membrane IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Enrichment
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Enrichment
MF GO:0034212 peptide N-acetyltransferase activity IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0046942 carboxylic acid transport IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0098656 anion transmembrane transport IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
BP GO:1901475 pyruvate transmembrane transport IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
BP GO:1990542 mitochondrial transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 351 417
IPR000408 Reg_chr_condens 300 348
IPR000408 Reg_chr_condens 533 563
IPR000408 Reg_chr_condens 182 241
IPR000408 Reg_chr_condens 246 296
IPR000408 Reg_chr_condens 421 475
No external refs found!