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  5. Transcript_contig_54363

Transcript_contig_54363 (54363)


Aliases : 54363

Description : MATH/TRAF domain; Peptidase C19, ubiquitin carboxyl-terminal hydrolase [Interproscan].


Gene families : OG_01_0000492 (OrthoFinder) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54363
Cluster HCCA: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000217.46 tig00000217_g19176.t1 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre01.g030450 30788364 Protein degradation.peptidase families.cysteine-type... 0.01 OrthoFinder
Cre07.g336200 30774569 Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz07g24170.t1 No alias Ubiquitin carboxyl-terminal hydrolase, C-terminal;... 0.01 OrthoFinder
EOD33970 No alias MATH/TRAF domain; Ubiquitin carboxyl-terminal hydrolase... 0.01 OrthoFinder
Sro1304_g261100.1 Contig1395.g12836 Probable ubiquitin carboxyl-terminal hydrolase creB 0.01 OrthoFinder
Vocar.0001s0874.1 32884682 Peptidase C19, ubiquitin carboxyl-terminal hydrolase... 0.01 OrthoFinder
Vocar.0047s0064.1 32899302 Ubiquitin carboxyl-terminal hydrolase, C-terminal;... 0.03 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33162.1_3473 PRW33162 Ubiquitin carboxyl-terminal hydrolase 26 isoform X1 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016579 protein deubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0004565 beta-galactosidase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
CC GO:0009341 beta-galactosidase complex IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
MF GO:0015925 galactosidase activity IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016840 carbon-nitrogen lyase activity IEP Enrichment
MF GO:0016843 amine-lyase activity IEP Enrichment
MF GO:0016844 strictosidine synthase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0019829 ATPase-coupled cation transmembrane transporter activity IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Enrichment
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP Enrichment
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Enrichment
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 185 503
IPR002083 MATH/TRAF_dom 50 167
No external refs found!