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Transcript_contig_54339 (54339)


Aliases : 54339

Description : Chitin-binding, type 1; D-galactoside/L-rhamnose binding SUEL lectin domain; Pectate lyase superfamily protein [Interproscan].


Gene families : OG_01_0001489 (OrthoFinder) Phylogenetic Tree(s): OG0001489_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Transcript_contig_54339
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Cz03g02020.t1 No alias Pectate lyase superfamily protein [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54068 54068 D-galactoside/L-rhamnose binding SUEL lectin domain;... 0.02 OrthoFinder
Transcript_contig_58472 58472 Hypothetical protein 0.02 OrthoFinder
lcl|BLLF01000975.1_cds_GFH16287.1_10764 HaLaN_12677, GFH16287 Pectate_lyase_3 domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60776.1_4636 PRW60776 Band 7 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008061 chitin binding IEA Interproscan
MF GO:0030246 carbohydrate binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
MF GO:0045735 nutrient reservoir activity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR001002 Chitin-bd_1 30 70
IPR024535 Pectate_lyase_SF_prot 245 339
IPR000922 Lectin_gal-bd_dom 124 174
No external refs found!