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  5. Transcript_contig_54241

Transcript_contig_54241 (54241)


Aliases : 54241

Description : Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain [Interproscan].


Gene families : OG_01_0000075 (OrthoFinder) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54241
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021179.74 tig00021179_g19288.t1 ATP-dependent zinc metalloprotease FTSH 1, chloroplastic... 0.01 OrthoFinder
Cpa|evm.model.tig00022075.42 tig00022075_g23603.t1 ATP-dependent zinc metalloprotease FTSH, chloroplastic... 0.01 OrthoFinder
Cre02.g078966 30784942 ATP-dependent zinc metalloprotease FTSH 7, chloroplastic... 0.01 OrthoFinder
Cre09.g393950 30780473 Probable inactive ATP-dependent zinc metalloprotease... 0.03 OrthoFinder
Cre17.g739752 30782539 Probable inactive ATP-dependent zinc metalloprotease... 0.03 OrthoFinder
Cz02g01040.t1 No alias Peptidase M41, FtsH extracellular; AAA ATPase, AAA+ lid... 0.01 OrthoFinder
Cz02g25060.t1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.01 OrthoFinder
Cz03g27160.t1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.01 OrthoFinder
Cz05g33210.t1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.02 OrthoFinder
Cz10g22210.t1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.01 OrthoFinder
Cz13g18040.t1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.01 OrthoFinder
EOD15728 No alias ATP-dependent metalloprotease FtsH [Ensembl]. 0.01 OrthoFinder
OT_08G02770.1 No alias Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.02 OrthoFinder
OT_09G02820.1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.02 OrthoFinder
OT_09G02830.1 No alias Peptidase M41 [Interproscan]. 0.04 OrthoFinder
OT_10G01100.1 No alias Peptidase M41; AAA ATPase, AAA+ lid domain; ATPase,... 0.02 OrthoFinder
OT_11G02060.1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.02 OrthoFinder
PTI_01G04910.1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.03 OrthoFinder
Sro21_g014710.1 Contig813.g9061 Zinc metalloprotease FTSH, chloroplastic 0.01 OrthoFinder
Vocar.0004s0172.1 32889955 Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.04 OrthoFinder
Vocar.0004s0344.1 32889652 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
Vocar.0013s0271.1 32896473 Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.01 OrthoFinder
Vocar.0028s0163.1 32895585 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.01 OrthoFinder
XM_002508006.1 MICPUN_94954, 94954 Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.01 OrthoFinder
XM_002508675.1 MICPUN_95257, 95257 AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.02 OrthoFinder
XM_003061697.1 MicpuC2_28671, 28671 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW60934.1_745 PRW60934 ATP-dependent zinc metalloprotease chloroplastic isoform C 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60287.1_4164 PRW60287 Cell division isoform A 0.03 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39337.1_2559 PRW39337 ATP-dependent zinc metalloprotease FTSH chloroplastic 0.02 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33093.1_3571 PRW33093 Membrane AAA-metalloprotease 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499595.1_8548 KAA8499595 ATP-dependent zinc metalloprotease FtsH 3 0.01 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491842.1_4850 KAA8491842 ATP-dependent zinc metalloprotease FTSH, chloroplastic 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004497 monooxygenase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 437 478
IPR003959 ATPase_AAA_core 283 414
IPR000642 Peptidase_M41 496 688
No external refs found!