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  5. Transcript_contig_54121

Transcript_contig_54121 (54121)


Aliases : 54121

Description : ABC-2 type transporter; ABC transporter-like [Interproscan].


Gene families : OG_01_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_54121
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
Cz03g22070.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
Cz12g02110.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
PTI_06G00650.1 No alias ABC transporter-like; ABC-2 type transporter [Interproscan]. 0.01 OrthoFinder
Sro1485_g276510.1 Contig4245.g32132 Putative white-brown complex homolog protein 30 0.01 OrthoFinder
SymbC1.scaffold131.10 131.10 ABC-2 type transporter [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold193.5 193.5 ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold4237.3 4237.3 ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
TP14G03100.1 No alias ABC transporter-like; ABC-2 type transporter [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56065.1_10007 PRW56065 ABC transporter G family member 22 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498384.1_7337 KAA8498384 ABC transporter G family member 22 0.01 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493197.1_9498 KAA8493197 ABC transporter G family member 15 0.01 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492889.1_2625 KAA8492889 ABC transporter G family member 7 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003997 acyl-CoA oxidase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005777 peroxisome IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0006635 fatty acid beta-oxidation IEP Enrichment
BP GO:0009062 fatty acid catabolic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016042 lipid catabolic process IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
BP GO:0019395 fatty acid oxidation IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0034440 lipid oxidation IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
CC GO:0042579 microbody IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
BP GO:0044242 cellular lipid catabolic process IEP Enrichment
BP GO:0044282 small molecule catabolic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
BP GO:0072329 monocarboxylic acid catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 1064 1275
IPR003439 ABC_transporter-like_ATP-bd 703 855
No external refs found!