Aliases : 54085
Description : RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1, domain 6; RNA polymerase Rpb1, domain 7; RNA polymerase Rpb1, domain 3; RNA polymerase II, heptapeptide repeat, eukaryotic [Interproscan].
Gene families : OG_01_0000697 (OrthoFinder) Phylogenetic Tree(s): OG0000697_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Transcript_contig_54085 | |
Cluster | HCCA: Cluster_108 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
lcl|BLLF01001189.1_cds_GFH17710.1_12187 | HaLaN_14398, GFH17710 | DNA-directed RNA polymerase subunit | 0.01 | OrthoFinder | |
lcl|LHPG02000007.1_cds_PRW57000.1_9043 | PRW57000 | DNA-directed RNA polymerase II subunit 1 | 0.01 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | transcription, DNA-templated | IEA | Interproscan |
BP | GO:0006366 | transcription by RNA polymerase II | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000049 | tRNA binding | IEP | Enrichment |
MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
MF | GO:0004645 | 1,4-alpha-oligoglucan phosphorylase activity | IEP | Enrichment |
MF | GO:0004743 | pyruvate kinase activity | IEP | Enrichment |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Enrichment |
MF | GO:0004817 | cysteine-tRNA ligase activity | IEP | Enrichment |
MF | GO:0005524 | ATP binding | IEP | Enrichment |
BP | GO:0005975 | carbohydrate metabolic process | IEP | Enrichment |
BP | GO:0006082 | organic acid metabolic process | IEP | Enrichment |
BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Enrichment |
BP | GO:0006423 | cysteinyl-tRNA aminoacylation | IEP | Enrichment |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Enrichment |
MF | GO:0008184 | glycogen phosphorylase activity | IEP | Enrichment |
MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Enrichment |
CC | GO:0016021 | integral component of membrane | IEP | Enrichment |
MF | GO:0016491 | oxidoreductase activity | IEP | Enrichment |
MF | GO:0016757 | glycosyltransferase activity | IEP | Enrichment |
MF | GO:0016758 | hexosyltransferase activity | IEP | Enrichment |
MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | IEP | Enrichment |
MF | GO:0016874 | ligase activity | IEP | Enrichment |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Enrichment |
MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Enrichment |
MF | GO:0016887 | ATPase | IEP | Enrichment |
MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Enrichment |
MF | GO:0020037 | heme binding | IEP | Enrichment |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
MF | GO:0030955 | potassium ion binding | IEP | Enrichment |
CC | GO:0031224 | intrinsic component of membrane | IEP | Enrichment |
MF | GO:0031420 | alkali metal ion binding | IEP | Enrichment |
MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
MF | GO:0036094 | small molecule binding | IEP | Enrichment |
BP | GO:0043038 | amino acid activation | IEP | Enrichment |
BP | GO:0043039 | tRNA aminoacylation | IEP | Enrichment |
MF | GO:0043167 | ion binding | IEP | Enrichment |
MF | GO:0043168 | anion binding | IEP | Enrichment |
BP | GO:0043436 | oxoacid metabolic process | IEP | Enrichment |
BP | GO:0044281 | small molecule metabolic process | IEP | Enrichment |
MF | GO:0046906 | tetrapyrrole binding | IEP | Enrichment |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | Enrichment |
MF | GO:0051540 | metal cluster binding | IEP | Enrichment |
BP | GO:0055114 | obsolete oxidation-reduction process | IEP | Enrichment |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Enrichment |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000684 | RNA_pol_II_repeat_euk | 1599 | 1612 |
IPR000684 | RNA_pol_II_repeat_euk | 1676 | 1689 |
IPR000684 | RNA_pol_II_repeat_euk | 1662 | 1675 |
IPR000684 | RNA_pol_II_repeat_euk | 1648 | 1661 |
IPR000684 | RNA_pol_II_repeat_euk | 1592 | 1605 |
IPR000684 | RNA_pol_II_repeat_euk | 1704 | 1713 |
IPR000684 | RNA_pol_II_repeat_euk | 1585 | 1598 |
IPR000684 | RNA_pol_II_repeat_euk | 1620 | 1633 |
IPR000684 | RNA_pol_II_repeat_euk | 1606 | 1619 |
IPR000684 | RNA_pol_II_repeat_euk | 1613 | 1626 |
IPR000684 | RNA_pol_II_repeat_euk | 1697 | 1710 |
IPR000684 | RNA_pol_II_repeat_euk | 1669 | 1682 |
IPR000684 | RNA_pol_II_repeat_euk | 1641 | 1654 |
IPR000684 | RNA_pol_II_repeat_euk | 1634 | 1647 |
IPR000684 | RNA_pol_II_repeat_euk | 1530 | 1542 |
IPR000684 | RNA_pol_II_repeat_euk | 1683 | 1696 |
IPR000684 | RNA_pol_II_repeat_euk | 1571 | 1584 |
IPR000684 | RNA_pol_II_repeat_euk | 1557 | 1570 |
IPR000684 | RNA_pol_II_repeat_euk | 1543 | 1556 |
IPR000684 | RNA_pol_II_repeat_euk | 1655 | 1668 |
IPR000684 | RNA_pol_II_repeat_euk | 1690 | 1703 |
IPR000684 | RNA_pol_II_repeat_euk | 1627 | 1640 |
IPR007080 | RNA_pol_Rpb1_1 | 12 | 329 |
IPR007083 | RNA_pol_Rpb1_4 | 691 | 796 |
IPR000722 | RNA_pol_asu | 331 | 499 |
IPR007066 | RNA_pol_Rpb1_3 | 502 | 665 |
IPR007075 | RNA_pol_Rpb1_6 | 869 | 1055 |
IPR007073 | RNA_pol_Rpb1_7 | 1140 | 1278 |
IPR007081 | RNA_pol_Rpb1_5 | 803 | 1400 |
No external refs found! |