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  5. Transcript_contig_53935

Transcript_contig_53935 (53935)


Aliases : 53935

Description : Ubiquitin conjugation factor E4, core [Interproscan].


Gene families : OG_01_0000550 (OrthoFinder) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_53935
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000939.12 tig00000939_g5489.t1 Putative ubiquitin-conjugating enzyme E2 38... 0.01 OrthoFinder
Cre12.g510300 30793496 Probable ubiquitin-conjugating enzyme E2 25... 0.02 OrthoFinder
Sro1113_g242730.1 Contig761.g8647 Conjugating enzyme E2 0.01 OrthoFinder
Sro160_g072110.1 Contig2985.g23707 (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O 0.01 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493125.1_9426 KAA8493125 Putative ubiquitin-conjugating enzyme E2 24 0.01 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Enrichment
MF GO:0003993 acid phosphatase activity IEP Enrichment
MF GO:0004497 monooxygenase activity IEP Enrichment
MF GO:0005216 ion channel activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0006914 autophagy IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
MF GO:0035251 UDP-glucosyltransferase activity IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
MF GO:0046527 glucosyltransferase activity IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051179 localization IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0061919 process utilizing autophagic mechanism IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
InterPro domains Description Start Stop
IPR019474 Ub_conjug_fac_E4_core 429 1052
No external refs found!