Transcript_contig_53878 (53878)


Aliases : 53878

Description : BP28, C-terminal domain; U3 small nucleolar RNA-associated protein 10, N-terminal [Interproscan].


Gene families : OG_01_0001400 (OrthoFinder) Phylogenetic Tree(s): OG0001400_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_53878
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000074.2 tig00000074_g1194.t1 Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre12.g548000 30793370 Uncharacterized protein At3g06530 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz07g10090.t1 No alias U3 small nucleolar RNA-associated protein 10, N-terminal... 0.01 OrthoFinder
Cz07g10100.t1 No alias BP28, C-terminal domain [Interproscan]. 0.05 OrthoFinder
Dusal.0077s00040.1 33192494 BP28, C-terminal domain [Interproscan]. 0.01 OrthoFinder
EOD15958 No alias BP28, C-terminal domain [Interproscan]. 0.05 OrthoFinder
OT_08G00810.1 No alias BP28, C-terminal domain; U3 small nucleolar... 0.02 OrthoFinder
PTI_08G04460.1 No alias BP28, C-terminal domain; U3 small nucleolar... 0.06 OrthoFinder
Sro819_g207040.1 Contig8.g90 HEAT repeat-containing protein 1 0.05 OrthoFinder
TP06G00080.1 No alias Hypothetical protein 0.02 OrthoFinder
Vocar.0007s0207.1 32888237 U3 small nucleolar RNA-associated protein 10,... 0.04 OrthoFinder
XM_002501766.1 MICPUN_57945, 57945 BP28, C-terminal domain; U3 small nucleolar... 0.02 OrthoFinder
XM_003058444.1 MicpuC2_68174, 68174 Hypothetical protein 0.04 OrthoFinder
XM_003058445.1 MicpuC2_58070, 58070 BP28, C-terminal domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61623.1_230 PRW61623 U3 small nucleolar RNA-associated protein 10,... 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR012954 BP28_C_dom 2034 2214
IPR022125 U3snoRNP10_N 230 345
No external refs found!