1. Home
  2. Species
  3. Chlorella vulgaris
  4. Sequence
  5. Transcript_contig_53761

Transcript_contig_53761 (53761)


Aliases : 53761

Description : Helicase-associated domain; Helicase, C-terminal; Domain of unknown function DUF1605; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_53761
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
Cre07.g349100 30774605 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder
Cz01g23210.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Cz02g22140.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
Cz12g28100.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Cz16g14170.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Dusal.0072s00015.1 33199066 Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
EOD22160 No alias Helicase, C-terminal; Helicase-associated domain [Interproscan]. 0.01 OrthoFinder
EOD26794 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
EOD28324 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
EOD29635 No alias ATP-dependent RNA helicase [Ensembl]. 0.03 OrthoFinder
EOD37846 No alias ATP-dependent RNA helicase [Ensembl]. 0.02 OrthoFinder
OT_08G03320.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
OT_16G00250.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.01 OrthoFinder
PTI_07G01260.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
Sro657_g182550.1 Contig301.g3975 Splicing factor ATP-dependent RNA helicase-like protein cdc28 0.01 OrthoFinder
TP20G00330.1 No alias Helicase-associated domain [Interproscan]. 0.01 OrthoFinder
Vocar.0001s0362.1 32885233 Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58375.1_7631 PRW58375 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 581 733
IPR001650 Helicase_C 778 905
IPR007502 Helicase-assoc_dom 969 1055
IPR011709 DUF1605 1113 1190
No external refs found!