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  5. Cpa|evm.model.tig00000681.7

Cpa|evm.model.tig00000681.7 (tig00000681_g3053.t1)


Aliases : tig00000681_g3053.t1

Description : ABC transporter C family member 1 OS=Arabidopsis thaliana


Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000681.7
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
PTI_02G04530.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
Sro183_g079600.1 Contig3056.g24305 Multiple drug resistance-associated protein-like transporter 1 0.01 OrthoFinder
Sro399_g134960.1 Contig279.g3623 Multiple drug resistance-associated protein-like transporter 1 0.01 OrthoFinder
Sro59_g034040.1 Contig571.g7250 Oligomycin resistance ATP-dependent permease YOR1 0.01 OrthoFinder
SymbC1.scaffold2220.1 2220.1 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
Transcript_contig_55599 55599 ABC transporter type 1, transmembrane domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_56405 56405 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
Transcript_contig_78893 78893 ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 1257 1325
IPR011527 ABC1_TM_dom 829 981
IPR011527 ABC1_TM_dom 124 260
IPR011527 ABC1_TM_dom 283 414
IPR003439 ABC_transporter-like_ATP-bd 481 605
No external refs found!