1. Home
  2. Species
  3. Chlorella vulgaris
  4. Sequence
  5. Transcript_contig_3036

Transcript_contig_3036 (3036)


Aliases : 3036

Description : Lycopene cyclase protein [Interproscan].


Gene families : OG_01_0001374 (OrthoFinder) Phylogenetic Tree(s): OG0001374_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_3036
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Cz09g18310.t1 No alias Lycopene cyclase protein [Interproscan]. 0.02 OrthoFinder
EOD06884 No alias Lycopene cyclase protein [Interproscan]. 0.02 OrthoFinder
Sro1391_g268770.1 Contig735.g8426 Capsanthin/capsorubin synthase, chromoplastic 0.01 OrthoFinder
Vocar.0002s0179.1 32891009 Lycopene cyclase protein [Interproscan]. 0.04 OrthoFinder
Vocar.0003s0250.1 32889025 Lycopene cyclase protein [Interproscan]. 0.02 OrthoFinder
XM_002505562.1 MICPUN_63812, 63812 Lycopene beta cyclase 0.02 OrthoFinder
lcl|BLLF01000275.1_cds_GFH09920.1_4397 HaLaN_05151, GFH09920 Lycopene beta cyclase 0.01 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56341.1_10296 PRW56341 Lycopene epsilon cyclase 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495109.1_3639 KAA8495109 Lycopene beta cyclase, chloroplastic/chromoplastic 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004817 cysteine-tRNA ligase activity IEP Enrichment
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment

No InterPro domains available for this sequence

No external refs found!