- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : 2473
Description : Helicase, C-terminal; Domain of unknown function DUF4217 [Interproscan].
Gene families : OG_01_0000319 (OrthoFinder) Phylogenetic Tree(s): OG0000319_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Transcript_contig_2473 | |
| Cluster | HCCA: Cluster_209 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000615.43 | tig00000615_g2571.t1 | DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
| Cre03.g156150 | 30787649 | DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana | 0.1 | OrthoFinder | |
| Cre03.g188550 | 30787162 | DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... | 0.08 | OrthoFinder | |
| Cre07.g314900 | 30775364 | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.1 | OrthoFinder | |
| Cz01g13050.t1 | No alias | Domain of unknown function DUF4217; Helicase,... | 0.05 | OrthoFinder | |
| Cz04g34220.t1 | No alias | Domain of unknown function DUF4217; Helicase,... | 0.12 | OrthoFinder | |
| Cz14g21220.t1 | No alias | Domain of unknown function DUF4217; Helicase,... | 0.04 | OrthoFinder | |
| EOD29706 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.05 | OrthoFinder | |
| EOD32210 | No alias | Helicase, C-terminal [Interproscan]. | 0.03 | OrthoFinder | |
| OT_08G01350.1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.05 | OrthoFinder | |
| OT_10G00320.1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.07 | OrthoFinder | |
| PTI_09G03560.1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.1 | OrthoFinder | |
| PTI_11G00580.1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.04 | OrthoFinder | |
| PTI_14G03510.1 | No alias | Helicase, C-terminal; Domain of unknown function... | 0.1 | OrthoFinder | |
| Sro1516_g279100.1 | Contig3898.g29880 | RNA helicase HAS1 | 0.11 | OrthoFinder | |
| Sro625_g177670.1 | Contig691.g8105 | RNA helicase DBP4 | 0.07 | OrthoFinder | |
| Sro967_g225820.1 | Contig1083.g10521 | Dependent RNA helicase | 0.05 | OrthoFinder | |
| TP03G01160.1 | No alias | Domain of unknown function DUF4217; Helicase,... | 0.04 | OrthoFinder | |
| TP03G05140.1 | No alias | Domain of unknown function DUF4217; Helicase,... | 0.05 | OrthoFinder | |
| UNPLg00617.t1 | No alias | DEAD/DEAH box helicase domain [Interproscan]. | 0.01 | OrthoFinder | |
| Vocar.0019s0050.1 | 32892772 | Domain of unknown function DUF4217; DEAD/DEAH box... | 0.03 | OrthoFinder | |
| XM_002503194.1 | MICPUN_82943, 82943 | Helicase, C-terminal; DEAD/DEAH box helicase domain;... | 0.07 | OrthoFinder | |
| XM_002505580.1 | MICPUN_87736, 87736 | Helicase, C-terminal; DEAD/DEAH box helicase domain;... | 0.08 | OrthoFinder | |
| XM_002508993.1 | MICPUN_66348, 66348 | Helicase, C-terminal; DEAD/DEAH box helicase domain;... | 0.07 | OrthoFinder | |
| XM_003061213.1 | MicpuC2_41358, 41358 | Helicase, C-terminal; Domain of unknown function... | 0.02 | OrthoFinder | |
| XM_003063698.1 | MicpuC2_22865, 22865 | Helicase, C-terminal; Domain of unknown function... | 0.04 | OrthoFinder | |
| lcl|BLLF01000028.1_cds_GFH06227.1_704 | HaLaN_00823, GFH06227 | RNA helicase | 0.03 | OrthoFinder | |
| lcl|BLLF01000456.1_cds_GFH11993.1_6470 | HaLaN_07604, GFH11993 | RNA helicase | 0.03 | OrthoFinder | |
| lcl|BLLF01003854.1_cds_GFH28385.1_22862 | HaLaN_26865, GFH28385 | RNA helicase | 0.02 | OrthoFinder | |
| lcl|LHPG02000002.1_cds_PRW60362.1_4133 | PRW60362 | DEAD-box ATP-dependent RNA helicase 17 | 0.03 | OrthoFinder | |
| lcl|LHPG02000004.1_cds_PRW59153.1_7055 | PRW59153 | ATP-dependent RNA helicase HAS1 | 0.11 | OrthoFinder | |
| lcl|LHPG02000018.1_cds_PRW33079.1_3833 | PRW33079 | DEAD-box ATP-dependent RNA helicase 32 | 0.11 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8498279.1_7232 | KAA8498279 | ATP-dependent RNA helicase HAS1 | 0.01 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| BP | GO:0001522 | pseudouridine synthesis | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003724 | RNA helicase activity | IEP | Enrichment |
| MF | GO:0003746 | translation elongation factor activity | IEP | Enrichment |
| MF | GO:0003824 | catalytic activity | IEP | Enrichment |
| MF | GO:0004000 | adenosine deaminase activity | IEP | Enrichment |
| MF | GO:0004133 | glycogen debranching enzyme activity | IEP | Enrichment |
| MF | GO:0004134 | 4-alpha-glucanotransferase activity | IEP | Enrichment |
| MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| MF | GO:0005525 | GTP binding | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005730 | nucleolus | IEP | Enrichment |
| BP | GO:0006355 | regulation of transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006414 | translational elongation | IEP | Enrichment |
| BP | GO:0006457 | protein folding | IEP | Enrichment |
| MF | GO:0008134 | transcription factor binding | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
| MF | GO:0008170 | N-methyltransferase activity | IEP | Enrichment |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Enrichment |
| MF | GO:0008175 | tRNA methyltransferase activity | IEP | Enrichment |
| MF | GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | IEP | Enrichment |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | Enrichment |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Enrichment |
| BP | GO:0010468 | regulation of gene expression | IEP | Enrichment |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Enrichment |
| MF | GO:0016740 | transferase activity | IEP | Enrichment |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
| MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Enrichment |
| MF | GO:0016866 | intramolecular transferase activity | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0019222 | regulation of metabolic process | IEP | Enrichment |
| MF | GO:0019239 | deaminase activity | IEP | Enrichment |
| CC | GO:0019867 | outer membrane | IEP | Enrichment |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | Enrichment |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0032259 | methylation | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
| BP | GO:0050789 | regulation of biological process | IEP | Enrichment |
| BP | GO:0050794 | regulation of cellular process | IEP | Enrichment |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | Enrichment |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0065007 | biological regulation | IEP | Enrichment |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | Enrichment |
| BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | Enrichment |
| No external refs found! |