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Transcript_contig_17 (17)


Aliases : 17

Description : ABC transporter type 1, transmembrane domain; ABC transporter-like [Interproscan].


Gene families : OG_01_0000039 (OrthoFinder) Phylogenetic Tree(s): OG0000039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Transcript_contig_17
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cre02.g097800 30785105 ABC transporter C family member 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre02.g103250 30785465, MRP5 Solute transport.primary active transport.ABC... 0.01 OrthoFinder
Cre08.g369740 30774035 No description available 0.01 OrthoFinder
PTI_03G04630.1 No alias ABC transporter type 1, transmembrane domain; ABC... 0.01 OrthoFinder
TP04G05700.1 No alias ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
Vocar.0026s0119.1 32892596 ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
XM_003055793.1 MicpuC2_55005, 55005 ATP-binding cassette superfamily 0.01 OrthoFinder
lcl|BLLF01000878.1_cds_GFH15643.1_10120 HaLaN_11904, GFH15643 ATP-binding cassette transporter 0.01 OrthoFinder
lcl|LHPG02000015.1_cds_PRW33949.1_2946 PRW33949 ABC transporter isoform A 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499784.1_8737 KAA8499784 ABC transporter C family member 2 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0004683 calmodulin-dependent protein kinase activity IEP Enrichment
MF GO:0005516 calmodulin binding IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
MF GO:0008146 sulfotransferase activity IEP Enrichment
BP GO:0009166 nucleotide catabolic process IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
BP GO:0019321 pentose metabolic process IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0019566 arabinose metabolic process IEP Enrichment
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046373 L-arabinose metabolic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
BP GO:1901292 nucleoside phosphate catabolic process IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 1077 1226
IPR011527 ABC1_TM_dom 741 969
IPR011527 ABC1_TM_dom 90 371
IPR003439 ABC_transporter-like_ATP-bd 433 563
No external refs found!