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Aliases : tig00000615_g2599.t1
Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPP0 component
Gene families : OG_01_0003829 (OrthoFinder) Phylogenetic Tree(s): OG0003829_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00000615.69 | |
| Cluster | HCCA: Cluster_43 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre12.g520500 | 30793097, RPP0 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.2 | OrthoFinder | |
| Cz05g18190.t1 | No alias | 60s Acidic ribosomal protein; Ribosomal protein L10P;... | 0.24 | OrthoFinder | |
| Dusal.0545s00010.1 | 33199351 | 60S ribosomal protein L10P, insertion domain; 60s Acidic... | 0.27 | OrthoFinder | |
| EOD31633 | No alias | Ribosomal protein L10P; 60S ribosomal protein L10P,... | 0.2 | OrthoFinder | |
| EOD32270 | No alias | Ribosomal protein L10P [Interproscan]. | 0.04 | OrthoFinder | |
| OT_14G00140.1 | No alias | Ribosomal protein L10P; 60S ribosomal protein L10P,... | 0.18 | OrthoFinder | |
| PTI_24G01760.1 | No alias | 60S ribosomal protein L10P, insertion domain; Ribosomal... | 0.34 | OrthoFinder | |
| Sro5_g004490.1 | Contig4001.g30764 | Acidic ribosomal protein P0 | 0.39 | OrthoFinder | |
| TP23G00110.1 | No alias | 60S ribosomal protein L10P, insertion domain; 60s Acidic... | 0.04 | OrthoFinder | |
| Vocar.0037s0115.1 | 32897611 | 60S ribosomal protein L10P, insertion domain; 60s Acidic... | 0.07 | OrthoFinder | |
| XM_002505537.1 | MICPUN_92321, 92321 | 60s Acidic ribosomal protein; Ribosomal protein L10P;... | 0.1 | OrthoFinder | |
| XM_003063650.1 | MicpuC2_48999, 48999 | 60S ribosomal protein L10P, insertion domain; Ribosomal... | 0.15 | OrthoFinder | |
| lcl|BLLF01002313.1_cds_GFH23608.1_18085 | HaLaN_21243, GFH23608 | 60S acidic ribosomal protein P0 | 0.06 | OrthoFinder | |
| lcl|LHPG02000008.1_cds_PRW56663.1_9798 | PRW56663 | 60S acidic ribosomal P0 | 0.11 | OrthoFinder | |
| lcl|VRMN01000010.1_cds_KAA8492277.1_5460 | KAA8492277 | 60S acidic ribosomal protein P0 | 0.1 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Enrichment |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Enrichment |
| MF | GO:0005198 | structural molecule activity | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005840 | ribosome | IEP | Enrichment |
| BP | GO:0006412 | translation | IEP | Enrichment |
| BP | GO:0006518 | peptide metabolic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| MF | GO:0008237 | metallopeptidase activity | IEP | Enrichment |
| MF | GO:0008483 | transaminase activity | IEP | Enrichment |
| BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0010024 | phytochromobilin biosynthetic process | IEP | Enrichment |
| MF | GO:0016636 | oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor | IEP | Enrichment |
| MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Enrichment |
| BP | GO:0019538 | protein metabolic process | IEP | Enrichment |
| MF | GO:0019843 | rRNA binding | IEP | Enrichment |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | Enrichment |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Enrichment |
| BP | GO:0043604 | amide biosynthetic process | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Enrichment |
| MF | GO:0050897 | cobalt ion binding | IEP | Enrichment |
| BP | GO:0051202 | phytochromobilin metabolic process | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
| No external refs found! |