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  5. Cpa|evm.model.tig00000615.55

Cpa|evm.model.tig00000615.55 (tig00000615_g2585.t1)


Aliases : tig00000615_g2585.t1

Description : Cell cycle.mitosis and meiosis.chromatin condensation.condensin I/II complex.CAP-E2/SMC2 component


Gene families : OG_01_0002043 (OrthoFinder) Phylogenetic Tree(s): OG0002043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000615.55
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Cre02.g086650 30785243, SMC2 Cell cycle.mitosis and meiosis.chromatin... 0.07 OrthoFinder
Cz10g09260.t1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.03 OrthoFinder
Dusal.0010s00009.1 33196797 RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.06 OrthoFinder
EOD10000 No alias SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan]. 0.04 OrthoFinder
OT_04G00570.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.04 OrthoFinder
PTI_22G01140.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.06 OrthoFinder
Sro864_g212600.1 Contig2395.g19632 Mitotic chromosome and X-chromosome-associated protein mix-1 0.07 OrthoFinder
TP01G05320.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.07 OrthoFinder
Vocar.0004s0431.1 32890001 SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan]. 0.03 OrthoFinder
XM_002504700.1 MICPUN_97912, 97912 Condensin complex component 0.05 OrthoFinder
lcl|BLLF01000924.1_cds_GFH15948.1_10425 HaLaN_12279, GFH15948 SMC hinge domain-containing protein 0.03 OrthoFinder
lcl|BLLF01000924.1_cds_GFH15949.1_10426 HaLaN_12280, GFH15949 Structural maintenance of chromosomes protein 0.02 OrthoFinder
lcl|BLLF01001625.1_cds_GFH20392.1_14869 HaLaN_17503, GFH20392 Structural maintenance of chromosomes protein 0.01 OrthoFinder
lcl|BLLF01001625.1_cds_GFH20393.1_14870 HaLaN_17504, GFH20393 Structural maintenance of chromosomes protein 0.04 OrthoFinder
lcl|BLLF01003274.1_cds_GFH26889.1_21366 HaLaN_25113, GFH26889 SMC hinge domain-containing protein 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61562.1_554 PRW61562 Structural maintenance of chromosomes 2-1 isoform B 0.04 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61563.1_555 PRW61563 Structural maintenance of chromosomes 2-1 isoform A 0.04 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497009.1_738 KAA8497009 Structural maintenance of chromosomes protein 2-1 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Enrichment
CC GO:0000775 chromosome, centromeric region IEP Enrichment
CC GO:0000776 kinetochore IEP Enrichment
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005815 microtubule organizing center IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0007049 cell cycle IEP Enrichment
BP GO:0007059 chromosome segregation IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0031144 proteasome localization IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
BP GO:0031503 protein-containing complex localization IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034629 cellular protein-containing complex localization IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
CC GO:0098687 chromosomal region IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR010935 SMC_hinge 522 640
IPR003395 RecF/RecN/SMC_N 2 1164
No external refs found!