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  5. lcl|LHPG02000026.1_cds_PRW18349.1_5786

lcl|LHPG02000026.1_cds_PRW18349.1_5786 (PRW18349)


Aliases : PRW18349

Description : Ribosomal RNA processing 1-like protein


Gene families : OG_01_0003254 (OrthoFinder) Phylogenetic Tree(s): OG0003254_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000026.1_cds_PRW18349.1_5786
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cre01.g019200 30788766 No description available 0.15 OrthoFinder
EOD09537 No alias Nucleolar, Nop52 [Interproscan]. 0.08 OrthoFinder
OT_14G00850.1 No alias Nucleolar, Nop52 [Interproscan]. 0.18 OrthoFinder
PTI_04G01930.1 No alias Nucleolar, Nop52 [Interproscan]. 0.01 OrthoFinder
Sro550_g164740.1 Contig731.g8404 RNA processing protein 1 homolog B 0.2 OrthoFinder
TP02G06580.1 No alias Nucleolar, Nop52 [Interproscan]. 0.13 OrthoFinder
Transcript_contig_89618 89618 Nucleolar, Nop52 [Interproscan]. 0.02 OrthoFinder
UNPLg00194.t1 No alias Nucleolar, Nop52 [Interproscan]. 0.08 OrthoFinder
Vocar.0045s0054.1 32887813 Nucleolar, Nop52 [Interproscan]. 0.02 OrthoFinder
XM_002505441.1 MICPUN_87731, 87731 Nucleolar, Nop52 [Interproscan]. 0.18 OrthoFinder
XM_003059715.1 MicpuC2_18763, 18763 Nucleolar, Nop52 [Interproscan]. 0.09 OrthoFinder
lcl|BLLF01000680.1_cds_GFH14040.1_8517 HaLaN_10013, GFH14040 Nucleolar, Nop52 [Interproscan]. 0.07 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496889.1_618 KAA8496889 Ribosomal RNA processing protein 1-like A 0.09 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0030688 preribosome, small subunit precursor IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042255 ribosome assembly IEP Enrichment
BP GO:0042256 mature ribosome assembly IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR010301 Nop52 25 232
No external refs found!