lcl|LHPG02000025.1_cds_PRW20297.1_5685 (PRW20297)


Aliases : PRW20297

Description : DNA mismatch repair MSH6 isoform B


Gene families : OG_01_0000301 (OrthoFinder) Phylogenetic Tree(s): OG0000301_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000025.1_cds_PRW20297.1_5685
Cluster HCCA: Cluster_28


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004556 alpha-amylase activity IEP Enrichment
MF GO:0004565 beta-galactosidase activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
CC GO:0009341 beta-galactosidase complex IEP Enrichment
BP GO:0010109 regulation of photosynthesis IEP Enrichment
BP GO:0010207 photosystem II assembly IEP Enrichment
MF GO:0010242 oxygen evolving activity IEP Enrichment
MF GO:0015925 galactosidase activity IEP Enrichment
MF GO:0016160 amylase activity IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0042548 regulation of photosynthesis, light reaction IEP Enrichment
BP GO:0042549 photosystem II stabilization IEP Enrichment
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
InterPro domains Description Start Stop
IPR021829 DUF3419 1689 2064
IPR007695 DNA_mismatch_repair_MutS-lik_N 405 523
IPR000432 DNA_mismatch_repair_MutS_C 1146 1337
IPR007860 DNA_mmatch_repair_MutS_con_dom 559 626
IPR007696 DNA_mismatch_repair_MutS_core 739 1083
No external refs found!