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  5. lcl|LHPG02000024.1_cds_PRW20332.1_5604

lcl|LHPG02000024.1_cds_PRW20332.1_5604 (PRW20332)


Aliases : PRW20332

Description : Pumilio-like protein isoform B


Gene families : OG_01_0000430 (OrthoFinder) Phylogenetic Tree(s): OG0000430_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000024.1_cds_PRW20332.1_5604
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_57194 57194 Pumilio RNA-binding repeat [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000024.1_cds_PRW20331.1_5603 PRW20331 Pumilio-like protein isoform A 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0008146 sulfotransferase activity IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
InterPro domains Description Start Stop
IPR005331 Sulfotransferase 927 1005
IPR001313 Pumilio_RNA-bd_rpt 627 652
IPR001313 Pumilio_RNA-bd_rpt 664 691
IPR001313 Pumilio_RNA-bd_rpt 516 540
IPR001313 Pumilio_RNA-bd_rpt 742 767
IPR001313 Pumilio_RNA-bd_rpt 588 608
No external refs found!