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Aliases : tig00000605_g2468.t1
Description : DNA repair and recombination protein RAD54 OS=Oryza sativa subsp. japonica
Gene families : OG_01_0000285 (OrthoFinder) Phylogenetic Tree(s): OG0000285_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00000605.2 | |
| Cluster | HCCA: Cluster_119 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre03.g189000 | 30787481 | Chromatin organisation.chromatin remodeling... | 0.03 | OrthoFinder | |
| Cre10.g430950 | 30790110 | Chromatin organisation.chromatin remodeling... | 0.01 | OrthoFinder | |
| EOD06519 | No alias | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.01 | OrthoFinder | |
| Vocar.0063s0045.1 | 32883497 | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder | |
| XM_003057874.1 | MicpuC2_57638, 57638 | SNF2 super family (RAD54B) | 0.01 | OrthoFinder | |
| XM_003059512.1 | MicpuC2_1194, 1194 | Helicase, C-terminal; SNF2-related, N-terminal domain... | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000428 | DNA-directed RNA polymerase complex | IEP | Enrichment |
| MF | GO:0003678 | DNA helicase activity | IEP | Enrichment |
| MF | GO:0003872 | 6-phosphofructokinase activity | IEP | Enrichment |
| MF | GO:0004386 | helicase activity | IEP | Enrichment |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Enrichment |
| MF | GO:0004725 | protein tyrosine phosphatase activity | IEP | Enrichment |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Enrichment |
| CC | GO:0005666 | RNA polymerase III complex | IEP | Enrichment |
| BP | GO:0006163 | purine nucleotide metabolic process | IEP | Enrichment |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0006260 | DNA replication | IEP | Enrichment |
| BP | GO:0006383 | transcription by RNA polymerase III | IEP | Enrichment |
| BP | GO:0006754 | ATP biosynthetic process | IEP | Enrichment |
| MF | GO:0008443 | phosphofructokinase activity | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | Enrichment |
| BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | Enrichment |
| BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | Enrichment |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | Enrichment |
| BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | Enrichment |
| BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | Enrichment |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | Enrichment |
| BP | GO:0015985 | energy coupled proton transport, down electrochemical gradient | IEP | Enrichment |
| BP | GO:0015986 | ATP synthesis coupled proton transport | IEP | Enrichment |
| MF | GO:0016791 | phosphatase activity | IEP | Enrichment |
| MF | GO:0016887 | ATPase | IEP | Enrichment |
| MF | GO:0019200 | carbohydrate kinase activity | IEP | Enrichment |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | Enrichment |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Enrichment |
| CC | GO:0030880 | RNA polymerase complex | IEP | Enrichment |
| CC | GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | IEP | Enrichment |
| BP | GO:0034220 | ion transmembrane transport | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| MF | GO:0043138 | 3'-5' DNA helicase activity | IEP | Enrichment |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
| CC | GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) | IEP | Enrichment |
| BP | GO:0046034 | ATP metabolic process | IEP | Enrichment |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | Enrichment |
| CC | GO:0055029 | nuclear DNA-directed RNA polymerase complex | IEP | Enrichment |
| BP | GO:0055085 | transmembrane transport | IEP | Enrichment |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Enrichment |
| BP | GO:0072521 | purine-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | Enrichment |
| BP | GO:0098655 | cation transmembrane transport | IEP | Enrichment |
| BP | GO:0098660 | inorganic ion transmembrane transport | IEP | Enrichment |
| BP | GO:0098662 | inorganic cation transmembrane transport | IEP | Enrichment |
| CC | GO:0140535 | intracellular protein-containing complex | IEP | Enrichment |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
| BP | GO:1902600 | proton transmembrane transport | IEP | Enrichment |
| CC | GO:1990234 | transferase complex | IEP | Enrichment |
| No external refs found! |