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  5. lcl|LHPG02000022.1_cds_PRW20729.1_5273

lcl|LHPG02000022.1_cds_PRW20729.1_5273 (PRW20729)


Aliases : PRW20729

Description : Branchpoint-bridging-like


Gene families : OG_01_0001291 (OrthoFinder) Phylogenetic Tree(s): OG0001291_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000022.1_cds_PRW20729.1_5273
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Cz07g11130.t1 No alias K Homology domain, type 1; Splicing factor 1,... 0.03 OrthoFinder
PTI_12G03380.1 No alias K Homology domain, type 1; Splicing factor 1,... 0.03 OrthoFinder
XM_002509359.1 MICPUN_62857, 62857 Splicing factor 1, helix-hairpin domain; K Homology... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
MF GO:0033897 ribonuclease T2 activity IEP Enrichment
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0061630 ubiquitin protein ligase activity IEP Enrichment
MF GO:0061659 ubiquitin-like protein ligase activity IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 357 426
IPR032570 SF1-HH 63 160
IPR004088 KH_dom_type_1 169 249
No external refs found!