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  5. lcl|LHPG02000021.1_cds_PRW20836.1_5061

lcl|LHPG02000021.1_cds_PRW20836.1_5061 (PRW20836)


Aliases : PRW20836

Description : Transporter associated with antigen processing 2 isoform 1


Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000021.1_cds_PRW20836.1_5061
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Cre02.g083354 30785555 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
TP01G02080.1 No alias ABC transporter-like; ABC transporter type 1,... 0.01 OrthoFinder
Transcript_contig_54411 54411 ABC transporter type 1, transmembrane domain; ABC... 0.02 OrthoFinder
XM_003060294.1 MicpuC2_27897, 27897 ATP-binding cassette superfamily 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Enrichment
MF GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity IEP Enrichment
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Enrichment
MF GO:0004000 adenosine deaminase activity IEP Enrichment
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006302 double-strand break repair IEP Enrichment
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Enrichment
BP GO:0006382 adenosine to inosine editing IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
BP GO:0016553 base conversion or substitution editing IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 56 325
IPR003439 ABC_transporter-like_ATP-bd 395 546
No external refs found!