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  5. lcl|LHPG02000021.1_cds_PRW20811.1_5083

lcl|LHPG02000021.1_cds_PRW20811.1_5083 (PRW20811)


Aliases : PRW20811

Description : Receptor of activated kinase C component of 40S small ribosomal subunit isoform C


Gene families : OG_01_0002731 (OrthoFinder) Phylogenetic Tree(s): OG0002731_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000021.1_cds_PRW20811.1_5083
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000169.6 tig00000169_g11878.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder
Cre06.g278222 30778664, RCK1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder
Cz04g00190.t1 No alias WD40 repeat [Interproscan]. 0.04 OrthoFinder
Dusal.0241s00008.1 33190252 WD40 repeat [Interproscan]. 0.06 OrthoFinder
EOD05714 No alias Receptor of activated protein kinase C [Ensembl]. 0.06 OrthoFinder
EOD14372 No alias Receptor of activated protein kinase C [Ensembl]. 0.06 OrthoFinder
OT_13G01530.1 No alias WD40 repeat [Interproscan]. 0.09 OrthoFinder
PTI_13G02390.1 No alias WD40 repeat [Interproscan]. 0.08 OrthoFinder
Sro925_g220910.1 Contig3078.g24550 Nucleotide-binding protein subunit beta-like protein 0.08 OrthoFinder
TP01G03160.1 No alias WD40 repeat [Interproscan]. 0.09 OrthoFinder
XM_002502789.1 MICPUN_94482, 94482 WD40 repeat [Interproscan]. 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499471.1_8424 KAA8499471 Guanine nucleotide-binding protein subunit beta-2-like 1 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006813 potassium ion transport IEA Interproscan
MF GO:0008324 cation transmembrane transporter activity IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0004556 alpha-amylase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
MF GO:0016160 amylase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 58 93
IPR001680 WD40_repeat 237 263
IPR001680 WD40_repeat 10 44
IPR001680 WD40_repeat 145 181
IPR001680 WD40_repeat 100 135
IPR001680 WD40_repeat 190 223
IPR001680 WD40_repeat 290 313
IPR004680 Cit_transptr-like_dom 686 1429
IPR006037 RCK_C 1202 1259
IPR004333 SBP_dom 400 473
No external refs found!