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  5. lcl|LHPG02000020.1_cds_PRW20982.1_4908

lcl|LHPG02000020.1_cds_PRW20982.1_4908 (PRW20982)


Aliases : PRW20982

Description : LOV domain-containing isoform B


Gene families : OG_01_0000569 (OrthoFinder) Phylogenetic Tree(s): OG0000569_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000020.1_cds_PRW20982.1_4908
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
OT_11G00420.1 No alias Zinc finger, CHY-type; RCHY1, zinc-ribbon; Zinc finger,... 0.03 OrthoFinder
Transcript_contig_90570 90570 Haemerythrin-like [Interproscan]. 0.02 OrthoFinder
XM_003061552.1 MicpuC2_50946, 50946 Haemerythrin-like; RCHY1, zinc-ribbon; Zinc finger,... 0.02 OrthoFinder
lcl|BLLF01003175.1_cds_GFH26594.1_21071 HaLaN_24768, GFH26594 RCHY1, zinc-ribbon; Zinc finger, CHY-type; Zinc finger,... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA Interproscan
BP GO:0000160 phosphorelay signal transduction system IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005667 transcription regulator complex IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0007165 signal transduction IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003989 acetyl-CoA carboxylase activity IEP Enrichment
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0006528 asparagine metabolic process IEP Enrichment
BP GO:0006529 asparagine biosynthetic process IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016421 CoA carboxylase activity IEP Enrichment
MF GO:0016603 glutaminyl-peptide cyclotransferase activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase IEP Enrichment
BP GO:0018199 peptidyl-glutamine modification IEP Enrichment
CC GO:0019008 molybdopterin synthase complex IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 1378 1420
IPR003316 E2F_WHTH_DNA-bd_dom 1715 1779
IPR003316 E2F_WHTH_DNA-bd_dom 1840 1922
IPR003594 HATPase_C 2773 2970
IPR008913 Znf_CHY 1250 1322
IPR011641 Tyr-kin_ephrin_A/B_rcpt-like 4000 4043
IPR011641 Tyr-kin_ephrin_A/B_rcpt-like 4181 4229
IPR000014 PAS 2522 2637
IPR012312 Haemerythrin-like 19 160
IPR012312 Haemerythrin-like 782 930
IPR003661 HisK_dim/P 2661 2725
IPR039512 RCHY1_zinc-ribbon 1425 1483
IPR001789 Sig_transdc_resp-reg_receiver 3431 3542
IPR001810 F-box_dom 4415 4458
IPR001810 F-box_dom 4538 4577
No external refs found!