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  5. lcl|LHPG02000018.1_cds_PRW33079.1_3833

lcl|LHPG02000018.1_cds_PRW33079.1_3833 (PRW33079)


Aliases : PRW33079

Description : DEAD-box ATP-dependent RNA helicase 32


Gene families : OG_01_0000319 (OrthoFinder) Phylogenetic Tree(s): OG0000319_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000018.1_cds_PRW33079.1_3833
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000441.12 tig00000441_g705.t1 DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00000615.43 tig00000615_g2571.t1 DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre03.g156150 30787649 DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana 0.24 OrthoFinder
Cre03.g188550 30787162 DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.14 OrthoFinder
Cre07.g314900 30775364 DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... 0.26 OrthoFinder
Cz01g13050.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.1 OrthoFinder
Cz04g34220.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.17 OrthoFinder
Cz14g21220.t1 No alias Domain of unknown function DUF4217; Helicase,... 0.05 OrthoFinder
EOD29706 No alias Helicase, C-terminal; Domain of unknown function... 0.14 OrthoFinder
EOD32210 No alias Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
EOD33059 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
OT_08G01350.1 No alias Helicase, C-terminal; Domain of unknown function... 0.1 OrthoFinder
OT_10G00320.1 No alias Helicase, C-terminal; Domain of unknown function... 0.14 OrthoFinder
PTI_09G03560.1 No alias Helicase, C-terminal; Domain of unknown function... 0.17 OrthoFinder
PTI_11G00580.1 No alias Helicase, C-terminal; Domain of unknown function... 0.1 OrthoFinder
PTI_14G03510.1 No alias Helicase, C-terminal; Domain of unknown function... 0.22 OrthoFinder
Sro1516_g279100.1 Contig3898.g29880 RNA helicase HAS1 0.17 OrthoFinder
Sro625_g177670.1 Contig691.g8105 RNA helicase DBP4 0.16 OrthoFinder
Sro967_g225820.1 Contig1083.g10521 Dependent RNA helicase 0.1 OrthoFinder
TP03G01160.1 No alias Domain of unknown function DUF4217; Helicase,... 0.06 OrthoFinder
TP03G05140.1 No alias Domain of unknown function DUF4217; Helicase,... 0.12 OrthoFinder
Transcript_contig_2473 2473 Helicase, C-terminal; Domain of unknown function DUF4217... 0.11 OrthoFinder
Vocar.0011s0222.1 32895328 Domain of unknown function DUF4217; DEAD/DEAH box... 0.03 OrthoFinder
Vocar.0019s0050.1 32892772 Domain of unknown function DUF4217; DEAD/DEAH box... 0.05 OrthoFinder
Vocar.0072s0011.1 32898787 Domain of unknown function DUF4217; DEAD/DEAH box... 0.03 OrthoFinder
XM_002503194.1 MICPUN_82943, 82943 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.12 OrthoFinder
XM_002505580.1 MICPUN_87736, 87736 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.15 OrthoFinder
XM_002508993.1 MICPUN_66348, 66348 Helicase, C-terminal; DEAD/DEAH box helicase domain;... 0.16 OrthoFinder
XM_003061213.1 MicpuC2_41358, 41358 Helicase, C-terminal; Domain of unknown function... 0.06 OrthoFinder
XM_003063698.1 MicpuC2_22865, 22865 Helicase, C-terminal; Domain of unknown function... 0.13 OrthoFinder
lcl|BLLF01000028.1_cds_GFH06227.1_704 HaLaN_00823, GFH06227 RNA helicase 0.03 OrthoFinder
lcl|BLLF01000456.1_cds_GFH11993.1_6470 HaLaN_07604, GFH11993 RNA helicase 0.05 OrthoFinder
lcl|BLLF01002892.1_cds_GFH25696.1_20173 HaLaN_23701, GFH25696 RNA helicase 0.02 OrthoFinder
lcl|BLLF01003854.1_cds_GFH28385.1_22862 HaLaN_26865, GFH28385 RNA helicase 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004359 glutaminase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006081 cellular aldehyde metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
BP GO:0042816 vitamin B6 metabolic process IEP Enrichment
BP GO:0042819 vitamin B6 biosynthetic process IEP Enrichment
BP GO:0042822 pyridoxal phosphate metabolic process IEP Enrichment
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0046184 aldehyde biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR025313 DUF4217 477 535
IPR011545 DEAD/DEAH_box_helicase_dom 118 288
IPR001650 Helicase_C 325 434
No external refs found!