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  5. lcl|LHPG02000018.1_cds_PRW33003.1_3686

lcl|LHPG02000018.1_cds_PRW33003.1_3686 (PRW33003)


Aliases : PRW33003

Description : Tryptophan synthase beta chain 1 isoform A


Gene families : OG_01_0001123 (OrthoFinder) Phylogenetic Tree(s): OG0001123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000018.1_cds_PRW33003.1_3686
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cz01g22210.t1 No alias Pyridoxal-phosphate dependent enzyme [Interproscan]. 0.02 OrthoFinder
PTI_01G09070.1 No alias Pyridoxal-phosphate dependent enzyme; Tryptophan... 0.03 OrthoFinder
Sro2053_g312650.1 Contig2326.g19184 Tryptophan synthase beta chain 0.03 OrthoFinder
Sro56_g032950.1 Contig3029.g24171 Tryptophan synthase beta chain 0.02 OrthoFinder
SymbC1.scaffold9.195 9.195 Pyridoxal-phosphate dependent enzyme [Interproscan]. 0.02 OrthoFinder
TP20G00800.1 No alias Pyridoxal-phosphate dependent enzyme; Tryptophan... 0.02 OrthoFinder
Vocar.0005s0206.1 32884019 Pyridoxal-phosphate dependent enzyme [Interproscan]. 0.03 OrthoFinder
XM_003058141.1 MicpuC2_33061, 33061 Pyridoxal-phosphate dependent enzyme [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0006996 organelle organization IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Enrichment
MF GO:0003937 IMP cyclohydrolase activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005534 galactose binding IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
CC GO:0009512 cytochrome b6f complex IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009522 photosystem I IEP Enrichment
CC GO:0009538 photosystem I reaction center IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001926 PLP-dep 343 673
IPR022170 MUL1-like 87 193
No external refs found!