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  5. lcl|LHPG02000018.1_cds_PRW32957.1_3893

lcl|LHPG02000018.1_cds_PRW32957.1_3893 (PRW32957)


Aliases : PRW32957

Description : Activating signal cointegrator 1 complex subunit 3 isoform C


Gene families : OG_01_0000386 (OrthoFinder) Phylogenetic Tree(s): OG0000386_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000018.1_cds_PRW32957.1_3893
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Cz03g23200.t1 No alias Brr2, N-terminal helicase PWI domain; Sec63 domain;... 0.03 OrthoFinder
Transcript_contig_67850 67850 Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.02 OrthoFinder
Vocar.0039s0093.1 32897827 Brr2, N-terminal helicase PWI domain; DEAD/DEAH box... 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497509.1_6462 KAA8497509 DExH-box ATP-dependent RNA helicase DExH17 0.02 OrthoFinder
lcl|VRMN01000024.1_cds_KAA8490499.1_4649 KAA8490499 U5 small nuclear ribonucleoprotein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004672 protein kinase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006468 protein phosphorylation IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Enrichment
MF GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
MF GO:0005548 phospholipid transporter activity IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0007009 plasma membrane organization IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
BP GO:0015914 phospholipid transport IEP Enrichment
BP GO:0016042 lipid catabolic process IEP Enrichment
MF GO:0016160 amylase activity IEP Enrichment
MF GO:0016161 beta-amylase activity IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0017121 plasma membrane phospholipid scrambling IEP Enrichment
MF GO:0017128 phospholipid scramblase activity IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034204 lipid translocation IEP Enrichment
BP GO:0045332 phospholipid translocation IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0097035 regulation of membrane lipid distribution IEP Enrichment
MF GO:0140303 intramembrane lipid transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR007197 rSAM 3901 4075
IPR001650 Helicase_C 1687 1784
IPR004179 Sec63-dom 1053 1354
IPR004179 Sec63-dom 1905 2244
IPR001245 Ser-Thr/Tyr_kinase_cat_dom 3568 3837
IPR011545 DEAD/DEAH_box_helicase_dom 1402 1586
IPR011545 DEAD/DEAH_box_helicase_dom 549 729
No external refs found!