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  5. lcl|LHPG02000017.1_cds_PRW33241.1_3551

lcl|LHPG02000017.1_cds_PRW33241.1_3551 (PRW33241)


Aliases : PRW33241

Description : RNA polymerase II-associated factor 1-like protein


Gene families : OG_01_0005399 (OrthoFinder) Phylogenetic Tree(s): OG0005399_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000017.1_cds_PRW33241.1_3551
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cre12.g520250 30793402 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder
Cz06g26020.t1 No alias RNA polymerase II associated factor Paf1 [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEA Interproscan
BP GO:0016570 histone modification IEA Interproscan
CC GO:0016593 Cdc73/Paf1 complex IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
CC GO:0005576 extracellular region IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
CC GO:0005849 mRNA cleavage factor complex IEP Enrichment
CC GO:0005892 acetylcholine-gated channel complex IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
BP GO:0006378 mRNA polyadenylation IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0007030 Golgi organization IEP Enrichment
MF GO:0008061 chitin binding IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
CC GO:0034702 ion channel complex IEP Enrichment
BP GO:0042176 regulation of protein catabolic process IEP Enrichment
CC GO:0043235 receptor complex IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:0098802 plasma membrane signaling receptor complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
CC GO:1902495 transmembrane transporter complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
CC GO:1990351 transporter complex IEP Enrichment
InterPro domains Description Start Stop
IPR007133 RNA_pol_II-assoc_Paf1 31 411
No external refs found!