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  5. lcl|LHPG02000017.1_cds_PRW33097.1_3479

lcl|LHPG02000017.1_cds_PRW33097.1_3479 (PRW33097)


Aliases : PRW33097

Description : Pre-mRNA-splicing factor


Gene families : OG_01_0005391 (OrthoFinder) Phylogenetic Tree(s): OG0005391_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000017.1_cds_PRW33097.1_3479
Cluster HCCA: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
Cre12.g499451 30793468 No description available 0.03 OrthoFinder
OT_01G01930.1 No alias RNA recognition motif domain; Torus domain [Interproscan]. 0.03 OrthoFinder
Transcript_contig_89575 89575 Torus domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004672 protein kinase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006468 protein phosphorylation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
InterPro domains Description Start Stop
IPR000719 Prot_kinase_dom 1143 1209
IPR032297 Torus 8 119
IPR001245 Ser-Thr/Tyr_kinase_cat_dom 1317 1517
IPR000504 RRM_dom 164 209
No external refs found!