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  5. lcl|LHPG02000016.1_cds_PRW33716.1_3343

lcl|LHPG02000016.1_cds_PRW33716.1_3343 (PRW33716)


Aliases : PRW33716

Description : DNA ligase 1 isoform X1


Gene families : OG_01_0000772 (OrthoFinder) Phylogenetic Tree(s): OG0000772_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|LHPG02000016.1_cds_PRW33716.1_3343
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_78582 78582 DNA ligase, ATP-dependent, C-terminal [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000009 alpha-1,6-mannosyltransferase activity IEP Enrichment
MF GO:0000030 mannosyltransferase activity IEP Enrichment
MF GO:0004376 glycolipid mannosyltransferase activity IEP Enrichment
MF GO:0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity IEP Enrichment
BP GO:0009435 NAD biosynthetic process IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016805 dipeptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR012309 DNA_ligase_ATP-dep_C 1324 1432
IPR011084 DRMBL 231 337
IPR012310 DNA_ligase_ATP-dep_cent 1021 1194
IPR012310 DNA_ligase_ATP-dep_cent 1259 1298
IPR012308 DNA_ligase_ATP-dep_N 784 961
No external refs found!